Nr search
BLASTX 2.2.2 [Dec-14-2001]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= KMC005421A_C01 KMC005421A_c01
(572 letters)
Database: nr
1,393,205 sequences; 448,689,247 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
dbj|BAA94964.1| epsilon1-COP [Glycine max] 231 1e-77
dbj|BAA94965.1| epsilon2-COP [Glycine max] 228 8e-75
ref|NP_174351.1| coatomer-like protein, epsilon subunit; protein... 199 5e-66
gb|AAM65018.1| coatomer-like protein, epsilon subunit [Arabidops... 199 1e-65
ref|NP_181030.1| putative coatomer epsilon subunit; protein id: ... 197 2e-63
>dbj|BAA94964.1| epsilon1-COP [Glycine max]
Length = 290
Score = 231 bits (590), Expect(2) = 1e-77
Identities = 112/124 (90%), Positives = 120/124 (96%)
Frame = +3
Query: 201 YIALGQLQFVISEIHDSSPTPLQAVKLLALYFSAPDNKESVIASLKEWLSDPAIGNNSTL 380
YIALGQLQFVISEIHD +PTPLQAVKLLALYFS+PD K+S IASLKEWL+DPAIGNN+TL
Sbjct: 47 YIALGQLQFVISEIHDDAPTPLQAVKLLALYFSSPDTKDSAIASLKEWLADPAIGNNATL 106
Query: 381 RLVAGLIFLHEQDFNEALKHTNAGGTLELHALNVQIFIKMHRSDYAERQLRIMQQIDEDH 560
RLVAGL+FLHE DFNEALKHTNAGGT+ELHALN+QIFIKMHRSDYAERQLRIMQQIDEDH
Sbjct: 107 RLVAGLVFLHENDFNEALKHTNAGGTMELHALNIQIFIKMHRSDYAERQLRIMQQIDEDH 166
Query: 561 TLTQ 572
TLTQ
Sbjct: 167 TLTQ 170
Score = 80.1 bits (196), Expect(2) = 1e-77
Identities = 37/45 (82%), Positives = 41/45 (90%)
Frame = +2
Query: 62 MATPDHLFNLRNNFYLGAFQAAINSSDVNGLSDDDAVERDSLVHR 196
MATPDHLFNLRNNFYLGA+QAAINSSDV LS +D +ERD+LVHR
Sbjct: 1 MATPDHLFNLRNNFYLGAYQAAINSSDVANLSQEDTLERDTLVHR 45
>dbj|BAA94965.1| epsilon2-COP [Glycine max]
Length = 288
Score = 228 bits (582), Expect(2) = 8e-75
Identities = 111/124 (89%), Positives = 119/124 (95%)
Frame = +3
Query: 201 YIALGQLQFVISEIHDSSPTPLQAVKLLALYFSAPDNKESVIASLKEWLSDPAIGNNSTL 380
YIALGQLQFVISEIHD +PTPLQAVKLLALYFS+PD K+S IASLKEWL+DPAI NN+TL
Sbjct: 45 YIALGQLQFVISEIHDDAPTPLQAVKLLALYFSSPDTKDSAIASLKEWLADPAIANNATL 104
Query: 381 RLVAGLIFLHEQDFNEALKHTNAGGTLELHALNVQIFIKMHRSDYAERQLRIMQQIDEDH 560
RLVAGL+FLHE DFNEALKHTNAGGT++LHALNVQIFIKMHRSDYAERQLRIMQQIDEDH
Sbjct: 105 RLVAGLVFLHENDFNEALKHTNAGGTMDLHALNVQIFIKMHRSDYAERQLRIMQQIDEDH 164
Query: 561 TLTQ 572
TLTQ
Sbjct: 165 TLTQ 168
Score = 73.9 bits (180), Expect(2) = 8e-75
Identities = 33/43 (76%), Positives = 38/43 (87%)
Frame = +2
Query: 68 TPDHLFNLRNNFYLGAFQAAINSSDVNGLSDDDAVERDSLVHR 196
TPDHLFNLRNN YLGA+QAAINS DV LS +D++ERD+LVHR
Sbjct: 1 TPDHLFNLRNNLYLGAYQAAINSGDVTNLSQEDSLERDTLVHR 43
>ref|NP_174351.1| coatomer-like protein, epsilon subunit; protein id: At1g30630.1,
supported by cDNA: 35814., supported by cDNA:
gi_13194793, supported by cDNA: gi_13878124, supported
by cDNA: gi_17104796 [Arabidopsis thaliana]
gi|25350283|pir||F86431 hypothetical protein T5I8.8
[imported] - Arabidopsis thaliana
gi|4587519|gb|AAD25750.1|AC007060_8 Strong similarity to
F19I3.7 gi|3033380 putative coatomer epsilon subunit
from Arabidopsis thaliana BAC gb|AC004238. ESTs
gb|Z17908, gb|AA728673, gb|N96555, gb|H76335,
gb|AA712463, gb|W43247, gb|T45611, gb|T21160, gb|T14119
and AI100483 come from this gene
gi|13194794|gb|AAK15559.1|AF348588_1 putative coatomer
protein, epsilon subunit [Arabidopsis thaliana]
gi|13878125|gb|AAK44140.1|AF370325_1 putative coatomer
protein, epsilon subunit [Arabidopsis thaliana]
gi|17104797|gb|AAL34287.1| putative coatomer protein,
epsilon subunit [Arabidopsis thaliana]
Length = 292
Score = 199 bits (506), Expect(2) = 5e-66
Identities = 91/124 (73%), Positives = 114/124 (91%)
Frame = +3
Query: 201 YIALGQLQFVISEIHDSSPTPLQAVKLLALYFSAPDNKESVIASLKEWLSDPAIGNNSTL 380
YIALG Q VISEI +++ TPLQAVKLLA+Y S+P+NKES I+SL+EWL+DP +GNN+ +
Sbjct: 50 YIALGSYQLVISEIDEAAATPLQAVKLLAMYLSSPENKESTISSLREWLADPTVGNNAII 109
Query: 381 RLVAGLIFLHEQDFNEALKHTNAGGTLELHALNVQIFIKMHRSDYAERQLRIMQQIDEDH 560
RL+AG IF+HE+D+NEALKHT++GGT++LHALNVQIFIKMHRSD+AE+QLR+MQQIDEDH
Sbjct: 110 RLIAGTIFMHEEDYNEALKHTHSGGTMDLHALNVQIFIKMHRSDFAEKQLRVMQQIDEDH 169
Query: 561 TLTQ 572
TLTQ
Sbjct: 170 TLTQ 173
Score = 73.9 bits (180), Expect(2) = 5e-66
Identities = 34/46 (73%), Positives = 40/46 (86%)
Frame = +2
Query: 59 SMATPDHLFNLRNNFYLGAFQAAINSSDVNGLSDDDAVERDSLVHR 196
SMA PDHLFNLRN+FYLGA+QAAIN+S++ LS +D VERD LVHR
Sbjct: 3 SMAGPDHLFNLRNHFYLGAYQAAINNSEIPNLSQEDIVERDCLVHR 48
>gb|AAM65018.1| coatomer-like protein, epsilon subunit [Arabidopsis thaliana]
Length = 289
Score = 199 bits (506), Expect(2) = 1e-65
Identities = 91/124 (73%), Positives = 114/124 (91%)
Frame = +3
Query: 201 YIALGQLQFVISEIHDSSPTPLQAVKLLALYFSAPDNKESVIASLKEWLSDPAIGNNSTL 380
YIALG Q VISEI +++ TPLQAVKLLA+Y S+P+NKES I+SL+EWL+DP +GNN+ +
Sbjct: 47 YIALGSYQLVISEIDEAAATPLQAVKLLAMYLSSPENKESTISSLREWLADPTVGNNAII 106
Query: 381 RLVAGLIFLHEQDFNEALKHTNAGGTLELHALNVQIFIKMHRSDYAERQLRIMQQIDEDH 560
RL+AG IF+HE+D+NEALKHT++GGT++LHALNVQIFIKMHRSD+AE+QLR+MQQIDEDH
Sbjct: 107 RLIAGTIFMHEEDYNEALKHTHSGGTMDLHALNVQIFIKMHRSDFAEKQLRVMQQIDEDH 166
Query: 561 TLTQ 572
TLTQ
Sbjct: 167 TLTQ 170
Score = 72.4 bits (176), Expect(2) = 1e-65
Identities = 33/45 (73%), Positives = 39/45 (86%)
Frame = +2
Query: 62 MATPDHLFNLRNNFYLGAFQAAINSSDVNGLSDDDAVERDSLVHR 196
MA PDHLFNLRN+FYLGA+QAAIN+S++ LS +D VERD LVHR
Sbjct: 1 MAGPDHLFNLRNHFYLGAYQAAINNSEIPNLSQEDIVERDCLVHR 45
>ref|NP_181030.1| putative coatomer epsilon subunit; protein id: At2g34840.1,
supported by cDNA: gi_19715633 [Arabidopsis thaliana]
gi|6647445|sp|O64748|COPE_ARATH Probable coatomer
epsilon subunit (Epsilon-coat protein) (Epsilon-COP)
gi|7484874|pir||T00466 coatomer complex epsilon chain
homolog F19I3.7 - Arabidopsis thaliana
gi|3033380|gb|AAC12824.1| putative coatomer epsilon
subunit [Arabidopsis thaliana]
gi|19715634|gb|AAL91638.1| At2g34840/F19I3.7
[Arabidopsis thaliana] gi|22655446|gb|AAM98315.1|
At2g34840/F19I3.7 [Arabidopsis thaliana]
Length = 293
Score = 197 bits (502), Expect(2) = 2e-63
Identities = 93/124 (75%), Positives = 111/124 (89%)
Frame = +3
Query: 201 YIALGQLQFVISEIHDSSPTPLQAVKLLALYFSAPDNKESVIASLKEWLSDPAIGNNSTL 380
YIALG Q VISEI +S+ TPLQAVKLLA+Y S P NKES I+SLKEWL+D IGNN TL
Sbjct: 51 YIALGSYQLVISEIDESAATPLQAVKLLAMYLSTPQNKESTISSLKEWLADSTIGNNDTL 110
Query: 381 RLVAGLIFLHEQDFNEALKHTNAGGTLELHALNVQIFIKMHRSDYAERQLRIMQQIDEDH 560
RL+AG+IF+HE+D+NE LKHT+AGGT++L+ALNVQIFIKMHR++YAE+QLR+MQQIDEDH
Sbjct: 111 RLIAGIIFMHEEDYNETLKHTHAGGTMDLYALNVQIFIKMHRAEYAEKQLRVMQQIDEDH 170
Query: 561 TLTQ 572
TLTQ
Sbjct: 171 TLTQ 174
Score = 67.0 bits (162), Expect(2) = 2e-63
Identities = 31/44 (70%), Positives = 37/44 (83%)
Frame = +2
Query: 65 ATPDHLFNLRNNFYLGAFQAAINSSDVNGLSDDDAVERDSLVHR 196
A PDHLFNLRNNFYLGA+Q AIN+S++ LS ++AVERD LV R
Sbjct: 6 AGPDHLFNLRNNFYLGAYQTAINNSEIANLSPENAVERDCLVFR 49
Database: nr
Posted date: Apr 1, 2003 2:05 AM
Number of letters in database: 448,689,247
Number of sequences in database: 1,393,205
Lambda K H
0.318 0.135 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 507,303,849
Number of Sequences: 1393205
Number of extensions: 11917691
Number of successful extensions: 102650
Number of sequences better than 10.0: 1502
Number of HSP's better than 10.0 without gapping: 68595
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 97105
length of database: 448,689,247
effective HSP length: 116
effective length of database: 287,077,467
effective search space used: 21243732558
frameshift window, decay const: 50, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
