Nr search
BLASTX 2.2.2 [Dec-14-2001]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= KMC005420A_C01 KMC005420A_c01
(262 letters)
Database: nr
1,393,205 sequences; 448,689,247 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
ref|NP_687056.1| recombination protein O [Streptococcus agalacti... 31 4.0
dbj|BAC20670.1| P0011H09.6 [Oryza sativa (japonica cultivar-grou... 31 5.2
>ref|NP_687056.1| recombination protein O [Streptococcus agalactiae 2603V/R]
gi|25010094|ref|NP_734489.1| Unknown [Streptococcus
agalactiae NEM316] gi|22533023|gb|AAM98928.1|AE014192_4
recombination protein O [Streptococcus agalactiae
2603V/R] gi|23094445|emb|CAD45664.1| Unknown
[Streptococcus agalactiae NEM316]
Length = 253
Score = 31.2 bits (69), Expect = 4.0
Identities = 12/22 (54%), Positives = 18/22 (81%)
Frame = +3
Query: 195 IRVSRRYGIILYNLNTKEDQEL 260
+RVS+ YG++LYN N +ED +L
Sbjct: 1 MRVSQTYGLVLYNRNYREDDKL 22
>dbj|BAC20670.1| P0011H09.6 [Oryza sativa (japonica cultivar-group)]
gi|24414104|dbj|BAC22351.1| similar to origin
recognition complex subunit 6 [Oryza sativa (japonica
cultivar-group)]
Length = 295
Score = 30.8 bits (68), Expect = 5.2
Identities = 14/43 (32%), Positives = 24/43 (55%)
Frame = +1
Query: 31 YYLCVLQIKFSYDKIRIMELMST**RGFCTLSLTPSRKCMGVF 159
+YLC + K DK+++++L T F T+S + + C VF
Sbjct: 147 FYLCAKRHKLKVDKLKLIDLCGTSSSEFTTVSTSMADLCFDVF 189
Database: nr
Posted date: Apr 1, 2003 2:05 AM
Number of letters in database: 448,689,247
Number of sequences in database: 1,393,205
Lambda K H
0.318 0.135 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 184,383,068
Number of Sequences: 1393205
Number of extensions: 2974232
Number of successful extensions: 5912
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 5832
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 5912
length of database: 448,689,247
effective HSP length: 62
effective length of database: 362,310,537
effective search space used: 8695452888
frameshift window, decay const: 50, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
