Nr search
BLASTX 2.2.2 [Dec-14-2001]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= KMC005419A_C01 KMC005419A_c01
(681 letters)
Database: nr
1,393,205 sequences; 448,689,247 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
ref|NP_566275.1| expressed protein; protein id: At3g06190.1, sup... 157 2e-37
ref|NP_197401.1| putative protein; protein id: At5g19000.1 [Arab... 156 3e-37
gb|AAM97116.1| putative protein [Arabidopsis thaliana] gi|273119... 156 3e-37
dbj|BAC20790.1| contains ESTs AU056959(S21019),AU056960(S21019)~... 155 6e-37
gb|AAO72687.1| zinc finger POZ domain protein [Oryza sativa (jap... 107 2e-22
>ref|NP_566275.1| expressed protein; protein id: At3g06190.1, supported by cDNA:
gi_15028068, supported by cDNA: gi_20259304 [Arabidopsis
thaliana] gi|6862923|gb|AAF30312.1|AC018907_12 unknown
protein [Arabidopsis thaliana]
gi|15028069|gb|AAK76565.1| unknown protein [Arabidopsis
thaliana] gi|20259305|gb|AAM14388.1| unknown protein
[Arabidopsis thaliana]
Length = 406
Score = 157 bits (396), Expect = 2e-37
Identities = 77/110 (70%), Positives = 91/110 (82%)
Frame = -1
Query: 678 LERLKLMCEACLIEDVAINTVATTLALAEQHHCFPLKSVCLKFIAKPENLRAVMQTDGFE 499
LERL+ +CE+ L E ++INTVATTLALAEQHHCF LK+ CLKFIA PENL+AVM+TDGF+
Sbjct: 296 LERLRTICESKLCEGISINTVATTLALAEQHHCFQLKAACLKFIALPENLKAVMETDGFD 355
Query: 498 HLKESCPSVLSELLQYVASYTEHSDFMSKHGNEAVLDGGDMNGRRVKQRL 349
+LKESCPS+LSELL+YVA +EHS S H E DG D+NGRRVKQRL
Sbjct: 356 YLKESCPSLLSELLEYVARLSEHSLTSSGHRKELFADGCDLNGRRVKQRL 405
>ref|NP_197401.1| putative protein; protein id: At5g19000.1 [Arabidopsis thaliana]
Length = 442
Score = 156 bits (394), Expect = 3e-37
Identities = 78/110 (70%), Positives = 90/110 (80%)
Frame = -1
Query: 678 LERLKLMCEACLIEDVAINTVATTLALAEQHHCFPLKSVCLKFIAKPENLRAVMQTDGFE 499
LERLK +CE+ L E VAINTVATTLALAEQHHC LK+VCLKF+A PENL+AVMQTDGF+
Sbjct: 332 LERLKAICESKLCEGVAINTVATTLALAEQHHCLQLKAVCLKFVALPENLKAVMQTDGFD 391
Query: 498 HLKESCPSVLSELLQYVASYTEHSDFMSKHGNEAVLDGGDMNGRRVKQRL 349
+LKESCPS+L+ELLQYVA +EHS +S H E DG D +GRRVK RL
Sbjct: 392 YLKESCPSLLTELLQYVARLSEHSVIVSGHRKEIFADGCDASGRRVKPRL 441
>gb|AAM97116.1| putative protein [Arabidopsis thaliana] gi|27311975|gb|AAO00953.1|
putative protein [Arabidopsis thaliana]
Length = 407
Score = 156 bits (394), Expect = 3e-37
Identities = 78/110 (70%), Positives = 90/110 (80%)
Frame = -1
Query: 678 LERLKLMCEACLIEDVAINTVATTLALAEQHHCFPLKSVCLKFIAKPENLRAVMQTDGFE 499
LERLK +CE+ L E VAINTVATTLALAEQHHC LK+VCLKF+A PENL+AVMQTDGF+
Sbjct: 297 LERLKAICESKLCEGVAINTVATTLALAEQHHCLQLKAVCLKFVALPENLKAVMQTDGFD 356
Query: 498 HLKESCPSVLSELLQYVASYTEHSDFMSKHGNEAVLDGGDMNGRRVKQRL 349
+LKESCPS+L+ELLQYVA +EHS +S H E DG D +GRRVK RL
Sbjct: 357 YLKESCPSLLTELLQYVARLSEHSVIVSGHRKEIFADGCDASGRRVKPRL 406
>dbj|BAC20790.1| contains ESTs AU056959(S21019),AU056960(S21019)~similar to
Arabidopsis thaliana chromosome 5, At5g19000~unknown
protein [Oryza sativa (japonica cultivar-group)]
Length = 434
Score = 155 bits (391), Expect = 6e-37
Identities = 77/110 (70%), Positives = 92/110 (83%)
Frame = -1
Query: 678 LERLKLMCEACLIEDVAINTVATTLALAEQHHCFPLKSVCLKFIAKPENLRAVMQTDGFE 499
LERLKL+CE L EDVAINTVA TLALAEQHHC+ LK+VCL+F+A PENL+AVMQTDGF+
Sbjct: 326 LERLKLLCELKLCEDVAINTVANTLALAEQHHCYQLKTVCLRFVALPENLKAVMQTDGFD 385
Query: 498 HLKESCPSVLSELLQYVASYTEHSDFMSKHGNEAVLDGGDMNGRRVKQRL 349
+L++SCPS+L+ELL+YVA EHS + NE VLDGGD NGRRVK R+
Sbjct: 386 YLQQSCPSLLTELLEYVAKVGEHSVSPCLYSNE-VLDGGDANGRRVKPRI 434
>gb|AAO72687.1| zinc finger POZ domain protein [Oryza sativa (japonica
cultivar-group)]
Length = 183
Score = 107 bits (267), Expect = 2e-22
Identities = 56/112 (50%), Positives = 81/112 (72%), Gaps = 2/112 (1%)
Frame = -1
Query: 678 LERLKLMCEACLIEDVAINTVATTLALAEQHHCFPLKSVCLKFIAKPENLRAVMQTDGFE 499
L RL+L+CE+ L + +++N+VATTLALA++HH LKSVCLKF A ENL AV++TDGF+
Sbjct: 74 LPRLRLLCESYLCKHISVNSVATTLALADRHHAMELKSVCLKFAA--ENLSAVIRTDGFD 131
Query: 498 HLKESCPSVLSELLQYVASYTEHSDFMSKHGN--EAVLDGGDMNGRRVKQRL 349
+LK++CP++ SE+L+ VA E K + + DGGD +GRRV+ R+
Sbjct: 132 YLKDNCPALQSEILRTVAGCEEECSSGGKSQSVWGQLSDGGDTSGRRVRPRV 183
Database: nr
Posted date: Apr 1, 2003 2:05 AM
Number of letters in database: 448,689,247
Number of sequences in database: 1,393,205
Lambda K H
0.318 0.135 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 551,492,120
Number of Sequences: 1393205
Number of extensions: 10712263
Number of successful extensions: 23236
Number of sequences better than 10.0: 79
Number of HSP's better than 10.0 without gapping: 22625
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 23216
length of database: 448,689,247
effective HSP length: 119
effective length of database: 282,897,852
effective search space used: 30270070164
frameshift window, decay const: 50, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
