Nr search
BLASTX 2.2.2 [Dec-14-2001]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= KMC005418A_C01 KMC005418A_c01
(503 letters)
Database: nr
1,393,205 sequences; 448,689,247 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
ref|NP_191914.1| unknown protein; protein id: At4g00030.1, suppo... 165 2e-40
ref|NP_440481.1| unknown protein [Synechocystis sp. PCC 6803] gi... 39 0.044
ref|NP_704312.1| hypothetical protein [Plasmodium falciparum 3D7... 37 0.17
gb|AAD38023.1|AF148219_1 fibrillin [Nostoc sp. PCC 8009] 36 0.22
ref|NP_681209.1| fibrillin [Thermosynechococcus elongatus BP-1] ... 34 0.82
>ref|NP_191914.1| unknown protein; protein id: At4g00030.1, supported by cDNA:
gi_15809916, supported by cDNA: gi_18377822 [Arabidopsis
thaliana] gi|7486534|pir||T01331 hypothetical protein
F6N15.13 - Arabidopsis thaliana
gi|3193328|gb|AAC19310.1| F6N15.13 gene product
[Arabidopsis thaliana] gi|7267090|emb|CAB80761.1|
predicted protein of unknown function [Arabidopsis
thaliana] gi|15809917|gb|AAL06886.1| AT4g00030/F6N15_13
[Arabidopsis thaliana] gi|18377823|gb|AAL67098.1|
AT4g00030/F6N15_13 [Arabidopsis thaliana]
Length = 212
Score = 165 bits (418), Expect = 2e-40
Identities = 77/101 (76%), Positives = 87/101 (85%)
Frame = -3
Query: 501 GTRAGDVLQVIDVPGRTLNHVITFPPDGVFFVRSSIEIASSQRVNFRFTSAVLRGKNWGI 322
GT AGDVLQVIDV R LN+VITFPPDGVFFVRS I+IAS QRVNFRF SAVLRGKNW +
Sbjct: 109 GTTAGDVLQVIDVNKRILNNVITFPPDGVFFVRSDIDIASPQRVNFRFNSAVLRGKNWEL 168
Query: 321 PLPPSGQGWFDTVYLDDDLRVVKDIRGDYLVVDRASYSWKE 199
PLPP G+GWF+ VY+D ++RV KDIRGDYL+VDRA Y+W E
Sbjct: 169 PLPPFGKGWFENVYMDGEIRVAKDIRGDYLIVDRAPYNWTE 209
>ref|NP_440481.1| unknown protein [Synechocystis sp. PCC 6803] gi|7470324|pir||S75247
hypothetical protein slr1024 - Synechocystis sp. (strain
PCC 6803) gi|1652238|dbj|BAA17161.1|
ORF_ID:slr1024~unknown protein [Synechocystis sp. PCC
6803]
Length = 213
Score = 38.5 bits (88), Expect = 0.044
Identities = 33/122 (27%), Positives = 53/122 (43%), Gaps = 26/122 (21%)
Frame = -3
Query: 501 GTRAGDVLQVIDVPGRT-LNHVITFPP----DGVFFVRSSIEIAS-------SQRVNFRF 358
G + G + Q+I+VP ++ LN + P G V + EIA +R+N F
Sbjct: 88 GLKVGRIYQIINVPNQSFLNQAFVYHPLGLAKGYVKVTAKFEIAKPAGTVLPDKRINVEF 147
Query: 357 TSAVLR-GKNWGIPLP------------PSGQ-GWFDTVYLDDDLRVVKDIRGDYLVVDR 220
++ K G+P P P G+ + + YLDDDLR+ + G V+ +
Sbjct: 148 LERMISIQKLMGVPTPKLDPAKVVPARSPEGRIPFLEITYLDDDLRIGRGGEGSLFVLSK 207
Query: 219 AS 214
S
Sbjct: 208 VS 209
>ref|NP_704312.1| hypothetical protein [Plasmodium falciparum 3D7]
gi|23499051|emb|CAD51131.1| hypothetical protein
[Plasmodium falciparum 3D7]
Length = 1165
Score = 36.6 bits (83), Expect = 0.17
Identities = 13/42 (30%), Positives = 29/42 (68%)
Frame = +1
Query: 361 SEINSLRRRNLNTRPNEENSIRRKRDHVVEGSSRNIYDLQHI 486
+++N++ +N N N+ N+I RK + ++G+ +NI+++ HI
Sbjct: 339 NDMNNMNIKNNNVSKNDSNNINRKSNIFLKGTQKNIFEVNHI 380
>gb|AAD38023.1|AF148219_1 fibrillin [Nostoc sp. PCC 8009]
Length = 194
Score = 36.2 bits (82), Expect = 0.22
Identities = 25/92 (27%), Positives = 40/92 (43%), Gaps = 23/92 (25%)
Frame = -3
Query: 423 DGVFFVRSSIEIASSQRVNFRFTSAVL-------------------RGKNW-GIPLPPSG 304
+G+ VR+ E S +RV +F +++ GK + I P S
Sbjct: 103 EGLISVRAKFEPVSGRRVQVKFERSIIGLKSLIGYTSVENFIQQIETGKKFIAIDFPISS 162
Query: 303 ---QGWFDTVYLDDDLRVVKDIRGDYLVVDRA 217
QGW D Y+D+DLR+ + G V+ +A
Sbjct: 163 DTQQGWLDITYIDNDLRIGRGNEGSVFVLSKA 194
>ref|NP_681209.1| fibrillin [Thermosynechococcus elongatus BP-1]
gi|22294140|dbj|BAC07971.1| fibrillin
[Thermosynechococcus elongatus BP-1]
Length = 193
Score = 34.3 bits (77), Expect = 0.82
Identities = 23/91 (25%), Positives = 35/91 (38%), Gaps = 23/91 (25%)
Frame = -3
Query: 423 DGVFFVRSSIEIASSQRVNFRFTSAVLRGKNWGIPLPPSG-------------------- 304
+G+ V + E + QRV F +++ + W PS
Sbjct: 102 EGIISVLARFEPLTQQRVQVYFERSIVGLRQWLNYYSPSQFIPQLDSRQPLLALDVSLNS 161
Query: 303 ---QGWFDTVYLDDDLRVVKDIRGDYLVVDR 220
QGW D YLD+DLR+ + G V+ R
Sbjct: 162 NDQQGWLDITYLDEDLRISRGNEGSLFVLTR 192
Database: nr
Posted date: Apr 1, 2003 2:05 AM
Number of letters in database: 448,689,247
Number of sequences in database: 1,393,205
Lambda K H
0.318 0.135 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 450,322,955
Number of Sequences: 1393205
Number of extensions: 9661507
Number of successful extensions: 31749
Number of sequences better than 10.0: 19
Number of HSP's better than 10.0 without gapping: 30714
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 31731
length of database: 448,689,247
effective HSP length: 114
effective length of database: 289,863,877
effective search space used: 15362785481
frameshift window, decay const: 50, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
