Nr search
BLASTX 2.2.2 [Dec-14-2001]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= KMC005415A_C01 KMC005415A_c01
(434 letters)
Database: nr
1,393,205 sequences; 448,689,247 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
gb|AAK26326.1|AF339501_1 alpha-COP-like protein [Pichia angusta] 38 0.025
gb|EAA16037.1| hypothetical protein [Plasmodium yoelii yoelii] 38 0.033
gb|EAA13197.1| agCP2742 [Anopheles gambiae str. PEST] 37 0.056
ref|NP_524836.2| beta'-coatomer protein CG6699-PA gi|27923965|sp... 37 0.073
gb|EAA37302.1| GLP_66_17561_13728 [Giardia lamblia ATCC 50803] 36 0.095
>gb|AAK26326.1|AF339501_1 alpha-COP-like protein [Pichia angusta]
Length = 1206
Score = 38.1 bits (87), Expect = 0.025
Identities = 16/31 (51%), Positives = 22/31 (70%)
Frame = -2
Query: 412 HGAPITAVDWHPTLPILLTGSADNSVRVTSL 320
H P+ AVD+HPT PI ++G D +V+V SL
Sbjct: 52 HDGPVRAVDFHPTQPIFVSGGDDYTVKVWSL 82
>gb|EAA16037.1| hypothetical protein [Plasmodium yoelii yoelii]
Length = 635
Score = 37.7 bits (86), Expect = 0.033
Identities = 22/63 (34%), Positives = 32/63 (49%), Gaps = 2/63 (3%)
Frame = +3
Query: 162 GNCINMHISLVERERERDHHITTYNSNKTYVNAHQT--KNEKTLRYKVARRGYDNKDVTR 335
GNCIN + E + +DH I+ +K Y+N +Q KN K + YK +K+V
Sbjct: 465 GNCINKNSYFPEDKEIQDHEISYEPFHKIYINNYQNYLKNTKIMDYKNCVNKISDKNVKE 524
Query: 336 TEL 344
EL
Sbjct: 525 IEL 527
>gb|EAA13197.1| agCP2742 [Anopheles gambiae str. PEST]
Length = 834
Score = 37.0 bits (84), Expect = 0.056
Identities = 15/28 (53%), Positives = 21/28 (74%)
Frame = -2
Query: 412 HGAPITAVDWHPTLPILLTGSADNSVRV 329
H ++AV +HP LPILLTGS D ++R+
Sbjct: 233 HAQNVSAVYFHPELPILLTGSEDGTIRI 260
>ref|NP_524836.2| beta'-coatomer protein CG6699-PA gi|27923965|sp|O62621|COPP_DROME
Coatomer beta' subunit (Beta'-coat protein) (Beta'-COP)
gi|22946399|gb|AAF53294.2| CG6699-PA [Drosophila
melanogaster]
Length = 914
Score = 36.6 bits (83), Expect = 0.073
Identities = 16/28 (57%), Positives = 21/28 (74%)
Frame = -2
Query: 412 HGAPITAVDWHPTLPILLTGSADNSVRV 329
H I+AV +HP LPI+LTGS D +VR+
Sbjct: 228 HAQNISAVCFHPELPIVLTGSEDGTVRI 255
>gb|EAA37302.1| GLP_66_17561_13728 [Giardia lamblia ATCC 50803]
Length = 1277
Score = 36.2 bits (82), Expect = 0.095
Identities = 12/31 (38%), Positives = 22/31 (70%)
Frame = -2
Query: 412 HGAPITAVDWHPTLPILLTGSADNSVRVTSL 320
H +P+ +D+HPT P+ +TG D ++++ SL
Sbjct: 51 HNSPVRCIDFHPTQPLFVTGGDDATIKLWSL 81
Database: nr
Posted date: Apr 1, 2003 2:05 AM
Number of letters in database: 448,689,247
Number of sequences in database: 1,393,205
Lambda K H
0.318 0.135 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 343,590,219
Number of Sequences: 1393205
Number of extensions: 6621362
Number of successful extensions: 20470
Number of sequences better than 10.0: 164
Number of HSP's better than 10.0 without gapping: 19495
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 20443
length of database: 448,689,247
effective HSP length: 120
effective length of database: 281,504,647
effective search space used: 6756111528
frameshift window, decay const: 50, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
