Nr search
BLASTX 2.2.2 [Dec-14-2001]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= KMC005414A_C01 KMC005414A_c01
(610 letters)
Database: nr
1,393,205 sequences; 448,689,247 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
gb|AAO49652.1| photosystem I-N subunit [Phaseolus vulgaris] 174 5e-61
ref|NP_201209.1| photosystem I reaction center subunit PSI-N pre... 172 3e-55
sp|O65107|PSAN_MAIZE Photosystem I reaction centre subunit N, ch... 165 5e-40
sp|P31093|PSAN_HORVU Photosystem I reaction centre subunit N, ch... 164 8e-40
sp|Q9SBN5|PSAN_VOLCA Photosystem I reaction centre subunit N, ch... 107 2e-22
>gb|AAO49652.1| photosystem I-N subunit [Phaseolus vulgaris]
Length = 170
Score = 174 bits (440), Expect(2) = 5e-61
Identities = 78/85 (91%), Positives = 84/85 (98%)
Frame = -2
Query: 381 GVIEEYLEKSKANKELNDKKRLATSGANFARAYTVQFGTCKFPENFTGCQDLAKQKKVPF 202
GVIEEYLEKSK NKELNDKKRLAT+GANFARAYTV+FG+CKFPENFTGCQDLAKQKKVPF
Sbjct: 86 GVIEEYLEKSKTNKELNDKKRLATTGANFARAYTVEFGSCKFPENFTGCQDLAKQKKVPF 145
Query: 201 ISEDLELECEGKDKYKCGSNVFWKW 127
+S+DL+LECEGKDKYKCGSNVFWKW
Sbjct: 146 LSDDLDLECEGKDKYKCGSNVFWKW 170
Score = 82.8 bits (203), Expect(2) = 5e-61
Identities = 50/81 (61%), Positives = 60/81 (73%), Gaps = 5/81 (6%)
Frame = -1
Query: 610 SVLACGYAISGAGCSELNSKLTSMPSLT---VSGSKLPVIKARQARVPEPKACDGRRTAL 440
+VLAC YA SG CS+LN+KLTSMPS+ +S KLP+IKA QA+V E K+ GRR+AL
Sbjct: 7 TVLACNYARSG--CSDLNAKLTSMPSVASPQLSALKLPLIKAHQAKVTESKSDQGRRSAL 64
Query: 439 ALLAATLF--STAVSNSSANA 383
LAATLF + A SNSSANA
Sbjct: 65 VYLAATLFTAAAAASNSSANA 85
>ref|NP_201209.1| photosystem I reaction center subunit PSI-N precursor (PSI-N);
protein id: At5g64040.1, supported by cDNA: gi_1237123,
supported by cDNA: gi_17065517, supported by cDNA:
gi_20148530 [Arabidopsis thaliana]
gi|1709825|sp|P49107|PSAN_ARATH Photosystem I reaction
centre subunit N, chloroplast precursor (PSI-N)
gi|1237124|gb|AAA93075.1| PSI-N
gi|10176952|dbj|BAB10272.1| photosystem I reaction
centre subunit psaN precursor [Arabidopsis thaliana]
gi|17065518|gb|AAL32913.1| photosystem I reaction centre
subunit psaN precursor [Arabidopsis thaliana]
gi|20148531|gb|AAM10156.1| photosystem I reaction center
subunit psaN precursor [Arabidopsis thaliana]
Length = 171
Score = 172 bits (436), Expect(2) = 3e-55
Identities = 78/85 (91%), Positives = 83/85 (96%)
Frame = -2
Query: 381 GVIEEYLEKSKANKELNDKKRLATSGANFARAYTVQFGTCKFPENFTGCQDLAKQKKVPF 202
GVI+EYLE+SK NKELNDKKRLATSGANFARA+TVQFG+CKFPENFTGCQDLAKQKKVPF
Sbjct: 87 GVIDEYLERSKTNKELNDKKRLATSGANFARAFTVQFGSCKFPENFTGCQDLAKQKKVPF 146
Query: 201 ISEDLELECEGKDKYKCGSNVFWKW 127
ISED+ LECEGKDKYKCGSNVFWKW
Sbjct: 147 ISEDIALECEGKDKYKCGSNVFWKW 171
Score = 65.1 bits (157), Expect(2) = 3e-55
Identities = 38/80 (47%), Positives = 51/80 (63%), Gaps = 4/80 (5%)
Frame = -1
Query: 610 SVLACGYAISGAGCSELNSKLTSMPSLTVSGSK----LPVIKARQARVPEPKACDGRRTA 443
SVL C YAI+G+G ELN K+ + S G K +PVIKA++ + +GRR+A
Sbjct: 7 SVLTCSYAIAGSGSVELNQKVGLVNSSVGFGQKKQMIMPVIKAQRVVGDDVDGSNGRRSA 66
Query: 442 LALLAATLFSTAVSNSSANA 383
+ LAATLFSTA ++SANA
Sbjct: 67 MVFLAATLFSTAAVSASANA 86
>sp|O65107|PSAN_MAIZE Photosystem I reaction centre subunit N, chloroplast precursor
(PSI-N) gi|7489798|pir||T01577 photosystem I protein
psaN precursor - maize gi|2981214|gb|AAC26197.1|
photosystem I complex PsaN subunit precursor [Zea mays]
Length = 112
Score = 165 bits (417), Expect = 5e-40
Identities = 73/84 (86%), Positives = 82/84 (96%)
Frame = -2
Query: 378 VIEEYLEKSKANKELNDKKRLATSGANFARAYTVQFGTCKFPENFTGCQDLAKQKKVPFI 199
+ +EYLEKSKANKELNDKKRLATSGANFARAYTV+FG+C+FP NFTGCQDLAKQKKVPFI
Sbjct: 29 IFDEYLEKSKANKELNDKKRLATSGANFARAYTVEFGSCQFPYNFTGCQDLAKQKKVPFI 88
Query: 198 SEDLELECEGKDKYKCGSNVFWKW 127
S+DLE+ECEGK+K+KCGSNVFWKW
Sbjct: 89 SDDLEIECEGKEKFKCGSNVFWKW 112
>sp|P31093|PSAN_HORVU Photosystem I reaction centre subunit N, chloroplast precursor
(PSI-N) gi|479690|pir||S35159 photosystem I chain psaN -
barley gi|19095|emb|CAA47056.1| photosystem I subunit N
[Hordeum vulgare subsp. vulgare]
Length = 145
Score = 164 bits (415), Expect = 8e-40
Identities = 77/105 (73%), Positives = 86/105 (81%)
Frame = -2
Query: 441 LLSWQPPFSALQSPIPLPMPGVIEEYLEKSKANKELNDKKRLATSGANFARAYTVQFGTC 262
LL F+A + V +EYLEKSK NKELNDKKR ATSGANFARAYTVQFG+C
Sbjct: 41 LLGLAAVFAATAASAGSARASVFDEYLEKSKLNKELNDKKRAATSGANFARAYTVQFGSC 100
Query: 261 KFPENFTGCQDLAKQKKVPFISEDLELECEGKDKYKCGSNVFWKW 127
KFP NFTGCQDLAKQKKVPFI++DLE+ECEGK+K+KCGSNVFWKW
Sbjct: 101 KFPYNFTGCQDLAKQKKVPFITDDLEIECEGKEKFKCGSNVFWKW 145
>sp|Q9SBN5|PSAN_VOLCA Photosystem I reaction centre subunit N, chloroplast precursor
(PSI-N) gi|5902586|gb|AAD55563.1|AF110781_1 photosystem
I reaction center subunit PSAN precursor [Volvox carteri
f. nagariensis]
Length = 139
Score = 107 bits (266), Expect = 2e-22
Identities = 52/84 (61%), Positives = 63/84 (74%)
Frame = -2
Query: 396 PLPMPGVIEEYLEKSKANKELNDKKRLATSGANFARAYTVQFGTCKFPENFTGCQDLAKQ 217
P GV+E+ L KS ANK LN+KKRLATS AN AR+ TV GTC+FPENF GC++LA
Sbjct: 49 PAANAGVVEDLLAKSAANKALNNKKRLATSYANLARSRTVYDGTCQFPENFFGCEELAFN 108
Query: 216 KKVPFISEDLELECEGKDKYKCGS 145
K V +I+EDL++ECEGKD CGS
Sbjct: 109 KGVKYIAEDLKIECEGKDAKSCGS 132
Database: nr
Posted date: Apr 1, 2003 2:05 AM
Number of letters in database: 448,689,247
Number of sequences in database: 1,393,205
Lambda K H
0.318 0.135 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 556,611,499
Number of Sequences: 1393205
Number of extensions: 12527048
Number of successful extensions: 41847
Number of sequences better than 10.0: 35
Number of HSP's better than 10.0 without gapping: 39868
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 41768
length of database: 448,689,247
effective HSP length: 117
effective length of database: 285,684,262
effective search space used: 24283162270
frameshift window, decay const: 50, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
