Nr search
BLASTX 2.2.2 [Dec-14-2001]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= KMC005410A_C01 KMC005410A_c01
(615 letters)
Database: nr
1,393,205 sequences; 448,689,247 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
ref|NP_187919.1| 30S ribosomal protein S10, putative; protein id... 210 1e-53
gb|AAF64190.1|AF245665_1 plastid ribosomal protein S10 precursor... 206 2e-52
ref|NP_043206.1| ribosomal protein S10 [Cyanophora paradoxa] gi|... 140 1e-32
ref|NP_441640.1| 30S ribosomal protein S10 [Synechocystis sp. PC... 137 9e-32
gb|ZP_00107089.1| hypothetical protein [Nostoc punctiforme] 137 1e-31
>ref|NP_187919.1| 30S ribosomal protein S10, putative; protein id: At3g13120.1,
supported by cDNA: 23372., supported by cDNA:
gi_14326494, supported by cDNA: gi_16226586, supported
by cDNA: gi_19548032 [Arabidopsis thaliana]
gi|10172599|dbj|BAB01403.1| contains similarity to 30S
ribosomal protein S10~gene_id:MJG19.7 [Arabidopsis
thaliana] gi|14326495|gb|AAK60293.1|AF385700_1
AT3g13120/MJG19_6 [Arabidopsis thaliana]
gi|16226587|gb|AAL16207.1|AF428438_1 AT3g13120/MJG19_6
[Arabidopsis thaliana] gi|19548033|gb|AAL87380.1|
AT3g13120/MJG19_6 [Arabidopsis thaliana]
Length = 191
Score = 210 bits (535), Expect = 1e-53
Identities = 102/105 (97%), Positives = 103/105 (97%)
Frame = -3
Query: 613 DAMAPKQKIRIKLRSYWVPLIEDSCPQILDAARNTNAKTMGPVPLPTKKRIYCVLKSPHV 434
D MAPKQKIRIKLRSYWVPLIEDSC QILDAARNTNAKTMGPVPLPTKKRIYCVLKSPHV
Sbjct: 87 DKMAPKQKIRIKLRSYWVPLIEDSCKQILDAARNTNAKTMGPVPLPTKKRIYCVLKSPHV 146
Query: 433 HKDARFHFEIRTHQRLIDILYPTAQTIDSLMQLDLPAGVDVEVKL 299
HKDARFHFEIRTHQR+IDILYPTAQTIDSLMQLDLPAGVDVEVKL
Sbjct: 147 HKDARFHFEIRTHQRMIDILYPTAQTIDSLMQLDLPAGVDVEVKL 191
>gb|AAF64190.1|AF245665_1 plastid ribosomal protein S10 precursor [Mesembryanthemum
crystallinum]
Length = 197
Score = 206 bits (525), Expect = 2e-52
Identities = 100/105 (95%), Positives = 102/105 (96%)
Frame = -3
Query: 613 DAMAPKQKIRIKLRSYWVPLIEDSCPQILDAARNTNAKTMGPVPLPTKKRIYCVLKSPHV 434
D MAPKQKIRIKLRSYWVPLIEDSC QI+DAAR TNAKTMGPVPLPTKKRI+CVLKSPHV
Sbjct: 93 DQMAPKQKIRIKLRSYWVPLIEDSCKQIMDAARTTNAKTMGPVPLPTKKRIFCVLKSPHV 152
Query: 433 HKDARFHFEIRTHQRLIDILYPTAQTIDSLMQLDLPAGVDVEVKL 299
HKDARFHFEIRTHQRLIDILYPTAQTIDSLMQLDLPAGVDVEVKL
Sbjct: 153 HKDARFHFEIRTHQRLIDILYPTAQTIDSLMQLDLPAGVDVEVKL 197
>ref|NP_043206.1| ribosomal protein S10 [Cyanophora paradoxa]
gi|133709|sp|P17009|RR10_CYAPA Cyanelle 30S ribosomal
protein S10 gi|70927|pir||R3KT10 ribosomal protein S10 -
Cyanophora paradoxa cyanelle gi|11391|emb|CAA36388.1|
ribosomal protein S10 (AA 1-105) [Cyanophora paradoxa]
gi|336632|gb|AAA31700.1| ribosomal protein S10 (rps10;
rpsJ) gi|1016150|gb|AAA81237.1| ribosomal protein S10
Length = 105
Score = 140 bits (353), Expect = 1e-32
Identities = 65/98 (66%), Positives = 85/98 (86%)
Frame = -3
Query: 592 KIRIKLRSYWVPLIEDSCPQILDAARNTNAKTMGPVPLPTKKRIYCVLKSPHVHKDARFH 413
KIRI+LRSY L+E+SC QI++AA+ T+A +GP+PLPTKK+IYCVL+SPHV KD+R H
Sbjct: 8 KIRIQLRSYDSSLLENSCEQIIEAAKRTDATAVGPIPLPTKKKIYCVLRSPHVDKDSREH 67
Query: 412 FEIRTHQRLIDILYPTAQTIDSLMQLDLPAGVDVEVKL 299
FEIR H+R+ID+ P+++TID+L +LDLPAGVDVEVKL
Sbjct: 68 FEIRVHRRIIDLYLPSSKTIDTLTRLDLPAGVDVEVKL 105
>ref|NP_441640.1| 30S ribosomal protein S10 [Synechocystis sp. PCC 6803]
gi|2500435|sp|P74226|RS10_SYNY3 30S ribosomal protein
S10 gi|7440293|pir||S75861 ribosomal protein S10 -
Synechocystis sp. (strain PCC 6803)
gi|1653406|dbj|BAA18320.1| 30S ribosomal protein S10
[Synechocystis sp. PCC 6803]
Length = 105
Score = 137 bits (346), Expect = 9e-32
Identities = 63/104 (60%), Positives = 86/104 (82%)
Frame = -3
Query: 610 AMAPKQKIRIKLRSYWVPLIEDSCPQILDAARNTNAKTMGPVPLPTKKRIYCVLKSPHVH 431
A +QKIRI+L+++ L++ SC +I+D A TNA +GP+PLPTK++IYCVL+SPHV
Sbjct: 2 ATLQQQKIRIRLKAFDRRLLDTSCDKIVDTANRTNAAAVGPIPLPTKRKIYCVLRSPHVD 61
Query: 430 KDARFHFEIRTHQRLIDILYPTAQTIDSLMQLDLPAGVDVEVKL 299
KD+R HFE RTH+R+IDI P+++TID+LM+LDLPAGVD+EVKL
Sbjct: 62 KDSREHFETRTHRRIIDIYQPSSKTIDALMKLDLPAGVDIEVKL 105
>gb|ZP_00107089.1| hypothetical protein [Nostoc punctiforme]
Length = 105
Score = 137 bits (345), Expect = 1e-31
Identities = 63/104 (60%), Positives = 86/104 (82%)
Frame = -3
Query: 610 AMAPKQKIRIKLRSYWVPLIEDSCPQILDAARNTNAKTMGPVPLPTKKRIYCVLKSPHVH 431
A +QKIRI+L+++ L++ SC +I+D A TNA +GP+PLPTK+RIYCVL+SPHV
Sbjct: 2 ATLQQQKIRIRLQAFDRRLLDTSCEKIVDTANRTNATAIGPIPLPTKRRIYCVLRSPHVD 61
Query: 430 KDARFHFEIRTHQRLIDILYPTAQTIDSLMQLDLPAGVDVEVKL 299
KD+R HFE RTH+R+IDI P+++TID+LM+LDLP+GVD+EVKL
Sbjct: 62 KDSREHFETRTHRRIIDIYQPSSKTIDALMKLDLPSGVDIEVKL 105
Database: nr
Posted date: Apr 1, 2003 2:05 AM
Number of letters in database: 448,689,247
Number of sequences in database: 1,393,205
Lambda K H
0.318 0.135 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 511,838,651
Number of Sequences: 1393205
Number of extensions: 10704938
Number of successful extensions: 23343
Number of sequences better than 10.0: 223
Number of HSP's better than 10.0 without gapping: 22523
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 23293
length of database: 448,689,247
effective HSP length: 117
effective length of database: 285,684,262
effective search space used: 24854530794
frameshift window, decay const: 50, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
