Nr search
BLASTX 2.2.2 [Dec-14-2001]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= KMC005408A_C01 KMC005408A_c01
(520 letters)
Database: nr
1,393,205 sequences; 448,689,247 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
ref|NP_189309.2| bHLH protein; protein id: At3g26744.1, supporte... 114 2e-32
ref|NP_172746.1| bHLH protein; protein id: At1g12860.1 [Arabidop... 113 9e-32
pir||C86262 F13K23.12 protein - Arabidopsis thaliana gi|8698734|... 113 9e-32
dbj|BAB90745.1| OSJNBa0052O12.3 [Oryza sativa (japonica cultivar... 107 1e-22
gb|AAM61687.1| unknown [Arabidopsis thaliana] 52 5e-06
>ref|NP_189309.2| bHLH protein; protein id: At3g26744.1, supported by cDNA:
gi_19310474, supported by cDNA: gi_19310474 [Arabidopsis
thaliana] gi|19310475|gb|AAL84972.1| AT3g26744/MLJ15_15
[Arabidopsis thaliana]
Length = 494
Score = 114 bits (286), Expect(2) = 2e-32
Identities = 56/59 (94%), Positives = 58/59 (97%)
Frame = -3
Query: 515 KVEVRLREGRAVNIHMFCTRRPGLLLSTMKALDNLGLDVQQAVISCFNGFALDVFRAEQ 339
+VEVRLREGRAVNIHMFC RRPGLLL+TMKALDNLGLDVQQAVISCFNGFALDVFRAEQ
Sbjct: 410 RVEVRLREGRAVNIHMFCGRRPGLLLATMKALDNLGLDVQQAVISCFNGFALDVFRAEQ 468
Score = 45.4 bits (106), Expect(2) = 2e-32
Identities = 18/27 (66%), Positives = 24/27 (88%)
Frame = -1
Query: 340 KCTEGQDVLPEQIKAVLLDSAGYPGMV 260
+C EGQ++LP+QIKAVL D+AGY GM+
Sbjct: 468 QCQEGQEILPDQIKAVLFDTAGYAGMI 494
>ref|NP_172746.1| bHLH protein; protein id: At1g12860.1 [Arabidopsis thaliana]
Length = 828
Score = 113 bits (283), Expect(2) = 9e-32
Identities = 55/59 (93%), Positives = 58/59 (98%)
Frame = -3
Query: 515 KVEVRLREGRAVNIHMFCTRRPGLLLSTMKALDNLGLDVQQAVISCFNGFALDVFRAEQ 339
+VEVRLREG+AVNIHMFC RRPGLLLSTM+ALDNLGLDVQQAVISCFNGFALDVFRAEQ
Sbjct: 744 RVEVRLREGKAVNIHMFCGRRPGLLLSTMRALDNLGLDVQQAVISCFNGFALDVFRAEQ 802
Score = 44.7 bits (104), Expect(2) = 9e-32
Identities = 20/27 (74%), Positives = 23/27 (85%)
Frame = -1
Query: 340 KCTEGQDVLPEQIKAVLLDSAGYPGMV 260
+C E DVLPEQIKAVLLD+AGY G+V
Sbjct: 802 QCQEDHDVLPEQIKAVLLDTAGYAGLV 828
>pir||C86262 F13K23.12 protein - Arabidopsis thaliana
gi|8698734|gb|AAF78492.1|AC012187_12 Contains similarity
to bHLH protein (Atmyc-146) from Arabidopsis thaliana
gb|AF013465 and contains a helix-loop-helix DNA-binding
PF|00010 domain. EST gb|AI999584 comes from this gene
gi|26451079|dbj|BAC42644.1| putative bHLH transcription
factor bHLH033 [Arabidopsis thaliana]
gi|28951035|gb|AAO63441.1| At1g12860 [Arabidopsis
thaliana]
Length = 450
Score = 113 bits (283), Expect(2) = 9e-32
Identities = 55/59 (93%), Positives = 58/59 (98%)
Frame = -3
Query: 515 KVEVRLREGRAVNIHMFCTRRPGLLLSTMKALDNLGLDVQQAVISCFNGFALDVFRAEQ 339
+VEVRLREG+AVNIHMFC RRPGLLLSTM+ALDNLGLDVQQAVISCFNGFALDVFRAEQ
Sbjct: 366 RVEVRLREGKAVNIHMFCGRRPGLLLSTMRALDNLGLDVQQAVISCFNGFALDVFRAEQ 424
Score = 44.7 bits (104), Expect(2) = 9e-32
Identities = 20/27 (74%), Positives = 23/27 (85%)
Frame = -1
Query: 340 KCTEGQDVLPEQIKAVLLDSAGYPGMV 260
+C E DVLPEQIKAVLLD+AGY G+V
Sbjct: 424 QCQEDHDVLPEQIKAVLLDTAGYAGLV 450
>dbj|BAB90745.1| OSJNBa0052O12.3 [Oryza sativa (japonica cultivar-group)]
gi|20805240|dbj|BAB92907.1| OSJNBa0093F16.27 [Oryza
sativa (japonica cultivar-group)]
Length = 412
Score = 107 bits (266), Expect = 1e-22
Identities = 49/67 (73%), Positives = 58/67 (86%)
Frame = -3
Query: 512 VEVRLREGRAVNIHMFCTRRPGLLLSTMKALDNLGLDVQQAVISCFNGFALDVFRAEQMH 333
VEVR+REG AVNIHMFC RRPG+L+ST++ALD+LGL ++QAVISCFNGFA+DVFRAEQ
Sbjct: 329 VEVRMREGHAVNIHMFCARRPGILMSTLRALDSLGLGIEQAVISCFNGFAMDVFRAEQCR 388
Query: 332 RRPGCPP 312
PG P
Sbjct: 389 DGPGLGP 395
>gb|AAM61687.1| unknown [Arabidopsis thaliana]
Length = 351
Score = 51.6 bits (122), Expect = 5e-06
Identities = 23/57 (40%), Positives = 36/57 (62%)
Frame = -3
Query: 497 REGRAVNIHMFCTRRPGLLLSTMKALDNLGLDVQQAVISCFNGFALDVFRAEQMHRR 327
R + + C+ +PGLLLST+ L+ LGL+++Q VISCF+ F+L +E +R
Sbjct: 272 RRDEDTRVDICCSPKPGLLLSTVNTLETLGLEIEQCVISCFSDFSLQASCSEGAEQR 328
Database: nr
Posted date: Apr 1, 2003 2:05 AM
Number of letters in database: 448,689,247
Number of sequences in database: 1,393,205
Lambda K H
0.318 0.135 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 410,100,617
Number of Sequences: 1393205
Number of extensions: 7941245
Number of successful extensions: 16155
Number of sequences better than 10.0: 46
Number of HSP's better than 10.0 without gapping: 15886
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 16149
length of database: 448,689,247
effective HSP length: 115
effective length of database: 288,470,672
effective search space used: 16442828304
frameshift window, decay const: 50, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
