Nr search
BLASTX 2.2.2 [Dec-14-2001]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= KMC005406A_C01 KMC005406A_c01
(486 letters)
Database: nr
1,393,205 sequences; 448,689,247 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
sp|O64982|PRS7_PRUPE 26S protease regulatory subunit 7 (26S prot... 132 2e-30
ref|NP_175778.1| 26S proteasome AAA-ATPase subunit RPT1a; protei... 132 2e-30
gb|AAF22521.1|AF123390_1 26S proteasome AAA-ATPase subunit RPT1a... 132 2e-30
sp|Q9FXT9|PRS7_ORYSA 26S protease regulatory subunit 7 (26S prot... 132 2e-30
sp|Q41365|PRS7_SPIOL 26S protease regulatory subunit 7 (26S prot... 132 2e-30
>sp|O64982|PRS7_PRUPE 26S protease regulatory subunit 7 (26S proteasome subunit 7) (26S
proteasome AAA-ATPase subunit RPT1) (Regulatory particle
triple-A ATPase subunit 1) gi|3172331|gb|AAC18523.1| 26S
proteasome subunit 7 [Prunus persica]
Length = 425
Score = 132 bits (332), Expect = 2e-30
Identities = 64/65 (98%), Positives = 65/65 (99%)
Frame = -3
Query: 484 RFELLSRLCPNSTGADIRSVCTEAGMYAIRARRKTVTEKDFLDAVNKVIKGYQKFSATPK 305
RFELL+RLCPNSTGADIRSVCTEAGMYAIRARRKTVTEKDFLDAVNKVIKGYQKFSATPK
Sbjct: 361 RFELLARLCPNSTGADIRSVCTEAGMYAIRARRKTVTEKDFLDAVNKVIKGYQKFSATPK 420
Query: 304 YMVYN 290
YMVYN
Sbjct: 421 YMVYN 425
>ref|NP_175778.1| 26S proteasome AAA-ATPase subunit RPT1a; protein id: At1g53750.1,
supported by cDNA: 36419., supported by cDNA:
gi_17065567, supported by cDNA: gi_6652877 [Arabidopsis
thaliana] gi|28558169|sp|Q9SSB5|PRS7_ARATH 26S protease
regulatory subunit 7 (26S proteasome subunit 7) (26S
proteasome AAA-ATPase subunit RPT1a) (Regulatory
particle triple-A ATPase subunit 1a)
gi|25289950|pir||G96577 26S proteasome ATPase subunit
[imported] - Arabidopsis thaliana
gi|6056388|gb|AAF02852.1|AC009324_1 26S proteasome
ATPase subunit [Arabidopsis thaliana]
gi|12324021|gb|AAG51970.1|AC024260_8 26S proteasome
ATPase subunit; 3861-6264 [Arabidopsis thaliana]
gi|17065568|gb|AAL32938.1| 26S proteasome ATPase subunit
[Arabidopsis thaliana] gi|23197722|gb|AAN15388.1| 26S
proteasome ATPase subunit [Arabidopsis thaliana]
Length = 426
Score = 132 bits (332), Expect = 2e-30
Identities = 64/65 (98%), Positives = 65/65 (99%)
Frame = -3
Query: 484 RFELLSRLCPNSTGADIRSVCTEAGMYAIRARRKTVTEKDFLDAVNKVIKGYQKFSATPK 305
RFELL+RLCPNSTGADIRSVCTEAGMYAIRARRKTVTEKDFLDAVNKVIKGYQKFSATPK
Sbjct: 362 RFELLARLCPNSTGADIRSVCTEAGMYAIRARRKTVTEKDFLDAVNKVIKGYQKFSATPK 421
Query: 304 YMVYN 290
YMVYN
Sbjct: 422 YMVYN 426
>gb|AAF22521.1|AF123390_1 26S proteasome AAA-ATPase subunit RPT1a [Arabidopsis thaliana]
Length = 426
Score = 132 bits (332), Expect = 2e-30
Identities = 64/65 (98%), Positives = 65/65 (99%)
Frame = -3
Query: 484 RFELLSRLCPNSTGADIRSVCTEAGMYAIRARRKTVTEKDFLDAVNKVIKGYQKFSATPK 305
RFELL+RLCPNSTGADIRSVCTEAGMYAIRARRKTVTEKDFLDAVNKVIKGYQKFSATPK
Sbjct: 362 RFELLARLCPNSTGADIRSVCTEAGMYAIRARRKTVTEKDFLDAVNKVIKGYQKFSATPK 421
Query: 304 YMVYN 290
YMVYN
Sbjct: 422 YMVYN 426
>sp|Q9FXT9|PRS7_ORYSA 26S protease regulatory subunit 7 (26S proteasome subunit 7) (26S
proteasome AAA-ATPase subunit RPT1) (Regulatory particle
triple-A ATPase subunit 1) gi|11094190|dbj|BAB17624.1|
26S proteasome regulatory particle triple-A ATPase
subunit1 [Oryza sativa (japonica cultivar-group)]
Length = 426
Score = 132 bits (332), Expect = 2e-30
Identities = 64/65 (98%), Positives = 65/65 (99%)
Frame = -3
Query: 484 RFELLSRLCPNSTGADIRSVCTEAGMYAIRARRKTVTEKDFLDAVNKVIKGYQKFSATPK 305
RFELL+RLCPNSTGADIRSVCTEAGMYAIRARRKTVTEKDFLDAVNKVIKGYQKFSATPK
Sbjct: 362 RFELLARLCPNSTGADIRSVCTEAGMYAIRARRKTVTEKDFLDAVNKVIKGYQKFSATPK 421
Query: 304 YMVYN 290
YMVYN
Sbjct: 422 YMVYN 426
>sp|Q41365|PRS7_SPIOL 26S protease regulatory subunit 7 (26S proteasome subunit 7) (26S
proteasome AAA-ATPase subunit RPT1) (Regulatory particle
triple-A ATPase subunit 1) gi|7435732|pir||T09104 26S
proteasome ATPase chain - spinach
gi|1395191|dbj|BAA13021.1| 26S proteasome ATPase subunit
[Spinacia oleracea]
Length = 426
Score = 132 bits (332), Expect = 2e-30
Identities = 64/65 (98%), Positives = 65/65 (99%)
Frame = -3
Query: 484 RFELLSRLCPNSTGADIRSVCTEAGMYAIRARRKTVTEKDFLDAVNKVIKGYQKFSATPK 305
RFELL+RLCPNSTGADIRSVCTEAGMYAIRARRKTVTEKDFLDAVNKVIKGYQKFSATPK
Sbjct: 362 RFELLARLCPNSTGADIRSVCTEAGMYAIRARRKTVTEKDFLDAVNKVIKGYQKFSATPK 421
Query: 304 YMVYN 290
YMVYN
Sbjct: 422 YMVYN 426
Database: nr
Posted date: Apr 1, 2003 2:05 AM
Number of letters in database: 448,689,247
Number of sequences in database: 1,393,205
Lambda K H
0.318 0.135 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 386,892,450
Number of Sequences: 1393205
Number of extensions: 7507056
Number of successful extensions: 17917
Number of sequences better than 10.0: 383
Number of HSP's better than 10.0 without gapping: 17526
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 17916
length of database: 448,689,247
effective HSP length: 113
effective length of database: 291,257,082
effective search space used: 13980339936
frameshift window, decay const: 50, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
