Nr search
BLASTX 2.2.2 [Dec-14-2001]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= KMC005405A_C01 KMC005405A_c01
(509 letters)
Database: nr
1,393,205 sequences; 448,689,247 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
emb|CAB75509.1| ABI3-interacting protein 2, AIP2 [Arabidopsis th... 111 2e-30
ref|NP_197591.1| ABI3-interacting protein 2; protein id: At5g209... 111 2e-30
ref|XP_230019.1| titin [Rattus norvegicus] 36 0.23
ref|NP_596869.1| titin isoform N2-A; connectin; CMH9, included; ... 34 0.86
emb|CAD12456.1| Titin [Homo sapiens] 34 0.86
>emb|CAB75509.1| ABI3-interacting protein 2, AIP2 [Arabidopsis thaliana]
Length = 310
Score = 111 bits (277), Expect(2) = 2e-30
Identities = 61/100 (61%), Positives = 70/100 (70%)
Frame = +3
Query: 207 SPSLRKSFYSVICRAATVMKTRYTGPGVWNAGLGLLEQALLLVSEPSEKAHLKAGMANAK 386
SPSLRK FY V+ R ATV+KTRYT G W AGL L E+A LVS+ SEK HLK+ +A AK
Sbjct: 50 SPSLRKQFYIVVSRVATVLKTRYTATGFWVAGLSLFEEAERLVSDASEKKHLKSCVAQAK 109
Query: 387 EHLHLEDNPSQALQPAENQANRGYLGEGHLTVDTEPPQPQ 506
E L DN QP E +++GYL EGHLTVD EPPQPQ
Sbjct: 110 EQLSEVDN-----QPTE--SSQGYLFEGHLTVDREPPQPQ 142
Score = 42.7 bits (99), Expect(2) = 2e-30
Identities = 21/40 (52%), Positives = 30/40 (74%)
Frame = +2
Query: 86 SEDLLKQELEELQKQLGKKQKFESAVSSLKSLLPQTYPSA 205
SE+ LK EL++LQKQL KK +FE++V S+ +LL Y S+
Sbjct: 10 SEESLKLELDDLQKQLNKKLRFEASVCSIHNLLRDHYSSS 49
>ref|NP_197591.1| ABI3-interacting protein 2; protein id: At5g20910.1, supported by
cDNA: 30983., supported by cDNA: gi_19698964
[Arabidopsis thaliana] gi|19698965|gb|AAL91218.1|
ABI3-interacting protein 2 [Arabidopsis thaliana]
gi|23198060|gb|AAN15557.1| ABI3-interacting protein 2
[Arabidopsis thaliana]
Length = 310
Score = 111 bits (277), Expect(2) = 2e-30
Identities = 61/100 (61%), Positives = 70/100 (70%)
Frame = +3
Query: 207 SPSLRKSFYSVICRAATVMKTRYTGPGVWNAGLGLLEQALLLVSEPSEKAHLKAGMANAK 386
SPSLRK FY V+ R ATV+KTRYT G W AGL L E+A LVS+ SEK HLK+ +A AK
Sbjct: 50 SPSLRKQFYIVVSRVATVLKTRYTATGFWVAGLSLFEEAERLVSDASEKKHLKSCVAQAK 109
Query: 387 EHLHLEDNPSQALQPAENQANRGYLGEGHLTVDTEPPQPQ 506
E L DN QP E +++GYL EGHLTVD EPPQPQ
Sbjct: 110 EQLSEVDN-----QPTE--SSQGYLFEGHLTVDREPPQPQ 142
Score = 42.7 bits (99), Expect(2) = 2e-30
Identities = 21/40 (52%), Positives = 30/40 (74%)
Frame = +2
Query: 86 SEDLLKQELEELQKQLGKKQKFESAVSSLKSLLPQTYPSA 205
SE+ LK EL++LQKQL KK +FE++V S+ +LL Y S+
Sbjct: 10 SEESLKLELDDLQKQLNKKLRFEASVCSIHNLLRDHYSSS 49
>ref|XP_230019.1| titin [Rattus norvegicus]
Length = 11646
Score = 36.2 bits (82), Expect = 0.23
Identities = 18/47 (38%), Positives = 29/47 (61%)
Frame = +2
Query: 59 AFEFEKRMESEDLLKQELEELQKQLGKKQKFESAVSSLKSLLPQTYP 199
AFE K+ + E+ + E+EEL+K +++FE VS ++ L QT P
Sbjct: 10211 AFELLKQSQEEETHRLEIEELEKSERDEKEFEELVSFIQQRLTQTEP 10257
>ref|NP_596869.1| titin isoform N2-A; connectin; CMH9, included; cardiomyopathy,
dilated 1G (autosomal dominant) [Homo sapiens]
Length = 34350
Score = 34.3 bits (77), Expect = 0.86
Identities = 16/47 (34%), Positives = 29/47 (61%)
Frame = +2
Query: 59 AFEFEKRMESEDLLKQELEELQKQLGKKQKFESAVSSLKSLLPQTYP 199
AFE K+ + E+ + E+EE+++ +++FE VS ++ L QT P
Sbjct: 9536 AFELLKQSQEEETHRLEIEEIERSERDEKEFEELVSFIQQRLSQTEP 9582
>emb|CAD12456.1| Titin [Homo sapiens]
Length = 34350
Score = 34.3 bits (77), Expect = 0.86
Identities = 16/47 (34%), Positives = 29/47 (61%)
Frame = +2
Query: 59 AFEFEKRMESEDLLKQELEELQKQLGKKQKFESAVSSLKSLLPQTYP 199
AFE K+ + E+ + E+EE+++ +++FE VS ++ L QT P
Sbjct: 9536 AFELLKQSQEEETHRLEIEEIERSERDEKEFEELVSFIQQRLSQTEP 9582
Database: nr
Posted date: Apr 1, 2003 2:05 AM
Number of letters in database: 448,689,247
Number of sequences in database: 1,393,205
Lambda K H
0.318 0.135 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 441,136,167
Number of Sequences: 1393205
Number of extensions: 9624610
Number of successful extensions: 36066
Number of sequences better than 10.0: 36
Number of HSP's better than 10.0 without gapping: 33660
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 36001
length of database: 448,689,247
effective HSP length: 114
effective length of database: 289,863,877
effective search space used: 15942513235
frameshift window, decay const: 50, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
