Nr search
BLASTX 2.2.2 [Dec-14-2001]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= KMC005404A_C01 KMC005404A_c01
(679 letters)
Database: nr
1,393,205 sequences; 448,689,247 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
ref|NP_188137.1| 30S ribosomal protein S20; protein id: At3g1519... 171 8e-42
dbj|BAB02573.1| gene_id:F4B12.10~unknown protein [Arabidopsis th... 159 4e-38
dbj|BAB90029.1| B1144G04.20 [Oryza sativa (japonica cultivar-gro... 139 5e-32
ref|NP_681978.1| 30S ribosomal protein S20 [Thermosynechococcus ... 72 5e-12
ref|NP_485632.1| 30S ribosomal protein S20 [Nostoc sp. PCC 7120]... 71 1e-11
>ref|NP_188137.1| 30S ribosomal protein S20; protein id: At3g15190.1, supported by
cDNA: 24271., supported by cDNA: gi_13605652, supported
by cDNA: gi_13899120, supported by cDNA: gi_15777888,
supported by cDNA: gi_18377541 [Arabidopsis thaliana]
gi|13605653|gb|AAK32820.1|AF361807_1 AT3g15190/F4B12_10
[Arabidopsis thaliana]
gi|13899121|gb|AAK48982.1|AF370555_1 Unknown protein
[Arabidopsis thaliana] gi|15777889|gb|AAL05905.1|
AT3g15190/F4B12_10 [Arabidopsis thaliana]
gi|18377542|gb|AAL66937.1| unknown protein [Arabidopsis
thaliana] gi|21592469|gb|AAM64420.1| 30S ribosomal
protein S20 [Arabidopsis thaliana]
Length = 202
Score = 171 bits (433), Expect = 8e-42
Identities = 84/115 (73%), Positives = 96/115 (83%), Gaps = 1/115 (0%)
Frame = -2
Query: 648 RTLVVCEVVTK-KKVDSAIKRARQAEKRRIYNKARKSEIKTRMKKVLEALESLKKKSDAQ 472
R L+VCE KK DSA KRARQAEKRR+YNK++KSE +TRMKKVLEALE LKKK+DAQ
Sbjct: 73 RQLIVCEAAAPTKKADSAAKRARQAEKRRVYNKSKKSEARTRMKKVLEALEGLKKKTDAQ 132
Query: 471 PEEILPIEKLIGEAYSVIDKAIRVGTLHRNTGGHRKSRLARRKKVVEIHHGWYTP 307
+EI+ +EKLIGEAYS IDKA++V LH+NTG RKSRLARRKK VEIHHGWY P
Sbjct: 133 ADEIVTVEKLIGEAYSAIDKAVKVKALHKNTGARRKSRLARRKKAVEIHHGWYVP 187
>dbj|BAB02573.1| gene_id:F4B12.10~unknown protein [Arabidopsis thaliana]
Length = 223
Score = 159 bits (401), Expect = 4e-38
Identities = 84/136 (61%), Positives = 96/136 (69%), Gaps = 22/136 (16%)
Frame = -2
Query: 648 RTLVVCEVVTK-KKVDSAIKRARQAEKRRIYNKARKSEIKTRMKK--------------- 517
R L+VCE KK DSA KRARQAEKRR+YNK++KSE +TRMKK
Sbjct: 73 RQLIVCEAAAPTKKADSAAKRARQAEKRRVYNKSKKSEARTRMKKQPMNNTEHWNPNESK 132
Query: 516 ------VLEALESLKKKSDAQPEEILPIEKLIGEAYSVIDKAIRVGTLHRNTGGHRKSRL 355
VLEALE LKKK+DAQ +EI+ +EKLIGEAYS IDKA++V LH+NTG RKSRL
Sbjct: 133 IHLSKQVLEALEGLKKKTDAQADEIVTVEKLIGEAYSAIDKAVKVKALHKNTGARRKSRL 192
Query: 354 ARRKKVVEIHHGWYTP 307
ARRKK VEIHHGWY P
Sbjct: 193 ARRKKAVEIHHGWYVP 208
>dbj|BAB90029.1| B1144G04.20 [Oryza sativa (japonica cultivar-group)]
Length = 196
Score = 139 bits (349), Expect = 5e-32
Identities = 72/122 (59%), Positives = 89/122 (72%), Gaps = 6/122 (4%)
Frame = -2
Query: 654 QRRTL-VVCEVV-----TKKKVDSAIKRARQAEKRRIYNKARKSEIKTRMKKVLEALESL 493
+RR L VVCE T ++ DS KR RQ ++ RI N ARK+E++TRMKKVL+ALE L
Sbjct: 67 RRRGLEVVCEAAKTGTATGRRPDSVKKRERQNDRHRIRNHARKAEMRTRMKKVLKALEKL 126
Query: 492 KKKSDAQPEEILPIEKLIGEAYSVIDKAIRVGTLHRNTGGHRKSRLARRKKVVEIHHGWY 313
+KK+DA PE+I+ IEK I EAY IDK ++VG +HRNTG HRKS LARRKK +EI GWY
Sbjct: 127 RKKADATPEDIIQIEKWISEAYKAIDKTVKVGAMHRNTGNHRKSLLARRKKAIEILRGWY 186
Query: 312 TP 307
P
Sbjct: 187 VP 188
>ref|NP_681978.1| 30S ribosomal protein S20 [Thermosynechococcus elongatus BP-1]
gi|22294912|dbj|BAC08740.1| 30S ribosomal protein S20
[Thermosynechococcus elongatus BP-1]
Length = 98
Score = 72.4 bits (176), Expect = 5e-12
Identities = 37/87 (42%), Positives = 55/87 (62%)
Frame = -2
Query: 609 VDSAIKRARQAEKRRIYNKARKSEIKTRMKKVLEALESLKKKSDAQPEEILPIEKLIGEA 430
+ SA KRA+ AE+ R+ NKA +S ++T +K L A+ +D PE++ + + A
Sbjct: 4 IKSAAKRAQIAERNRLRNKAYRSAVRTLIKNYLNAISQYS--TDPTPEKLAEVHHRLNLA 61
Query: 429 YSVIDKAIRVGTLHRNTGGHRKSRLAR 349
+S IDKA++ G LHRNTG RK+RL R
Sbjct: 62 FSKIDKAVKRGVLHRNTGARRKARLTR 88
>ref|NP_485632.1| 30S ribosomal protein S20 [Nostoc sp. PCC 7120]
gi|20978695|sp|Q8YWL3|RS20_ANASP 30S ribosomal protein
S20 gi|25294873|pir||AB2005 30S ribosomal protein S20
[imported] - Nostoc sp. (strain PCC 7120)
gi|17135412|dbj|BAB77958.1| 30S ribosomal protein S20
[Nostoc sp. PCC 7120]
Length = 97
Score = 71.2 bits (173), Expect = 1e-11
Identities = 39/91 (42%), Positives = 56/91 (60%)
Frame = -2
Query: 603 SAIKRARQAEKRRIYNKARKSEIKTRMKKVLEALESLKKKSDAQPEEILPIEKLIGEAYS 424
SA+KRA+ AE+ R+ NK KS +KT MK L A+++ ++ PE + + AYS
Sbjct: 6 SALKRAQIAERNRVRNKTYKSSVKTLMKNYLSAVQAYA--ANPTPESKQEAQTRLAAAYS 63
Query: 423 VIDKAIRVGTLHRNTGGHRKSRLARRKKVVE 331
IDKA++ G LH N G +KSRLA + K +E
Sbjct: 64 RIDKAVKRGILHPNNGARKKSRLASKLKPIE 94
Database: nr
Posted date: Apr 1, 2003 2:05 AM
Number of letters in database: 448,689,247
Number of sequences in database: 1,393,205
Lambda K H
0.318 0.135 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 600,270,225
Number of Sequences: 1393205
Number of extensions: 13628695
Number of successful extensions: 44057
Number of sequences better than 10.0: 168
Number of HSP's better than 10.0 without gapping: 42046
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 43929
length of database: 448,689,247
effective HSP length: 119
effective length of database: 282,897,852
effective search space used: 29987172312
frameshift window, decay const: 50, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
