Nr search
BLASTX 2.2.2 [Dec-14-2001]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= KMC005401A_C01 KMC005401A_c01
(507 letters)
Database: nr
1,393,205 sequences; 448,689,247 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
ref|NP_197414.1| GPAA1 - like protein; protein id: At5g19130.1 [... 90 2e-17
gb|AAO00773.1| GPAA1 - like protein [Arabidopsis thaliana] 90 2e-17
dbj|BAC01259.1| putative GPAA1 - like protein [Oryza sativa (jap... 84 9e-16
gb|EAA38904.1| GLP_435_1411_7626 [Giardia lamblia ATCC 50803] 33 1.9
ref|ZP_00029924.1| hypothetical protein [Burkholderia fungorum] 33 2.4
>ref|NP_197414.1| GPAA1 - like protein; protein id: At5g19130.1 [Arabidopsis
thaliana]
Length = 696
Score = 89.7 bits (221), Expect = 2e-17
Identities = 60/144 (41%), Positives = 80/144 (54%), Gaps = 13/144 (9%)
Frame = -3
Query: 505 SEWASLKSVTISTTFIGLSLMSVINFATAEIGALLIVPICLMARPLRLDVQARSLRTLLR 326
+ WA LKSVTIS FIGL LMS+INFATAEIGALL+VP CLMA+P++ +++R L++LL
Sbjct: 563 TNWAILKSVTISAAFIGLCLMSIINFATAEIGALLLVPTCLMAQPIKPALRSRRLKSLLG 622
Query: 325 AIRNLALGFIGFPPVAICSNERHV*RFSWY*CW*LLELGGIPLDM---------EQCPLT 173
A ++ L IGFP + ++ LL G + L +
Sbjct: 623 AFCSIVLLTIGFPVMFFAISKG------------LLGEGLVGLSLGGEFWTWLESLWAWK 670
Query: 172 ST*VLFI----CHCWALCVHILFH 113
S L+I CW LC+ ILFH
Sbjct: 671 SATYLYIGMVHLPCWLLCLCILFH 694
Score = 41.6 bits (96), Expect = 0.005
Identities = 23/67 (34%), Positives = 34/67 (50%), Gaps = 10/67 (14%)
Frame = -1
Query: 327 GPFVILL*VLLGFRQSPYVLMKGTF-EGFHGTNVG-DYWNWVESLWTWNSA--------H 178
G F ++ + +GF + + KG EG G ++G ++W W+ESLW W SA H
Sbjct: 622 GAFCSIVLLTIGFPVMFFAISKGLLGEGLVGLSLGGEFWTWLESLWAWKSATYLYIGMVH 681
Query: 177 LPLRRCC 157
LP C
Sbjct: 682 LPCWLLC 688
>gb|AAO00773.1| GPAA1 - like protein [Arabidopsis thaliana]
Length = 699
Score = 89.7 bits (221), Expect = 2e-17
Identities = 60/144 (41%), Positives = 80/144 (54%), Gaps = 13/144 (9%)
Frame = -3
Query: 505 SEWASLKSVTISTTFIGLSLMSVINFATAEIGALLIVPICLMARPLRLDVQARSLRTLLR 326
+ WA LKSVTIS FIGL LMS+INFATAEIGALL+VP CLMA+P++ +++R L++LL
Sbjct: 566 TNWAILKSVTISAAFIGLCLMSIINFATAEIGALLLVPTCLMAQPIKPALRSRRLKSLLG 625
Query: 325 AIRNLALGFIGFPPVAICSNERHV*RFSWY*CW*LLELGGIPLDM---------EQCPLT 173
A ++ L IGFP + ++ LL G + L +
Sbjct: 626 AFCSIVLLTIGFPVMFFAISKG------------LLGEGLVGLSLGGEFWTWLESLWAWK 673
Query: 172 ST*VLFI----CHCWALCVHILFH 113
S L+I CW LC+ ILFH
Sbjct: 674 SATYLYIGMVHLPCWLLCLCILFH 697
Score = 41.6 bits (96), Expect = 0.005
Identities = 23/67 (34%), Positives = 34/67 (50%), Gaps = 10/67 (14%)
Frame = -1
Query: 327 GPFVILL*VLLGFRQSPYVLMKGTF-EGFHGTNVG-DYWNWVESLWTWNSA--------H 178
G F ++ + +GF + + KG EG G ++G ++W W+ESLW W SA H
Sbjct: 625 GAFCSIVLLTIGFPVMFFAISKGLLGEGLVGLSLGGEFWTWLESLWAWKSATYLYIGMVH 684
Query: 177 LPLRRCC 157
LP C
Sbjct: 685 LPCWLLC 691
>dbj|BAC01259.1| putative GPAA1 - like protein [Oryza sativa (japonica
cultivar-group)]
Length = 718
Score = 84.0 bits (206), Expect = 9e-16
Identities = 49/135 (36%), Positives = 77/135 (56%), Gaps = 5/135 (3%)
Frame = -3
Query: 502 EWASLKSVTISTTFIGLSLMSVINFATAEIGALLIVPICLMARPLRLDVQARSLRTLLRA 323
EW LK+ I++ IG+ LMS+INFATA++GAL+++P+CL +RPLR ++ L +
Sbjct: 577 EWKLLKATMITSITIGMGLMSIINFATAQLGALILIPMCLFSRPLRAQLEMNFLPRTVLL 636
Query: 322 IRNLALGFIGFPPVAICSNERHV*RFSWY*CW*LLELGGIPLDME---QCPLTST*VLFI 152
N+ L +GFPP A + + + SW + +G L ME + + +F+
Sbjct: 637 ASNILLTVLGFPPAAFLIM-KGLSKGSWT----VDIVGDFWLWMEFLWEWSSATYLYVFL 691
Query: 151 CH--CWALCVHILFH 113
H CW LC+H+L H
Sbjct: 692 VHLPCWLLCIHVLLH 706
Score = 44.3 bits (103), Expect = 8e-04
Identities = 23/61 (37%), Positives = 34/61 (55%), Gaps = 9/61 (14%)
Frame = -1
Query: 312 LL*VLLGFRQSPYVLMKGTFEGFHGTN-VGDYWNWVESLWTWNSA--------HLPLRRC 160
+L +LGF + +++MKG +G + VGD+W W+E LW W+SA HLP
Sbjct: 640 ILLTVLGFPPAAFLIMKGLSKGSWTVDIVGDFWLWMEFLWEWSSATYLYVFLVHLPCWLL 699
Query: 159 C 157
C
Sbjct: 700 C 700
>gb|EAA38904.1| GLP_435_1411_7626 [Giardia lamblia ATCC 50803]
Length = 2071
Score = 33.1 bits (74), Expect = 1.9
Identities = 25/70 (35%), Positives = 34/70 (47%), Gaps = 3/70 (4%)
Frame = -1
Query: 321 FVILL*VLLGFRQSPYVLMKGTFEGF-HGTNVGDYWNWVESLWT--WNSAHLPLRRCCSS 151
F++L+ + F +LM T GF + N DY S T WN+ H LR C SS
Sbjct: 448 FIVLIPLFCSFSLVDMLLMM-TEGGFNYSFNSLDYTKIPISFITSDWNNYHSTLRICISS 506
Query: 150 ATAGHCVFTF 121
++ CVF F
Sbjct: 507 TSSSDCVFQF 516
>ref|ZP_00029924.1| hypothetical protein [Burkholderia fungorum]
Length = 596
Score = 32.7 bits (73), Expect = 2.4
Identities = 21/65 (32%), Positives = 33/65 (50%), Gaps = 2/65 (3%)
Frame = +3
Query: 267 LEHMATGGNPIKPKARLRMALSKVLKLLA*TSS--LKGRAIRQIGTMSKAPISAVAKLMT 440
++H+A G NP+ K + A++ VL L S R I Q+G +S A+ K++
Sbjct: 160 MKHVAAGMNPMDLKRGIDKAVAAVLDELHRLSKPIKTSREIAQVGAISANADEAIGKIIA 219
Query: 441 DMRDK 455
D DK
Sbjct: 220 DAMDK 224
Database: nr
Posted date: Apr 1, 2003 2:05 AM
Number of letters in database: 448,689,247
Number of sequences in database: 1,393,205
Lambda K H
0.318 0.135 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 433,918,185
Number of Sequences: 1393205
Number of extensions: 9265577
Number of successful extensions: 30969
Number of sequences better than 10.0: 15
Number of HSP's better than 10.0 without gapping: 30516
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 30966
length of database: 448,689,247
effective HSP length: 114
effective length of database: 289,863,877
effective search space used: 15652649358
frameshift window, decay const: 50, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
