Nr search
BLASTX 2.2.2 [Dec-14-2001]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= KMC005400A_C01 KMC005400A_c01
(595 letters)
Database: nr
1,393,205 sequences; 448,689,247 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
sp|O23758|NLTP_CICAR NONSPECIFIC LIPID-TRANSFER PROTEIN PRECURSO... 162 4e-39
pir||T12079 non-specific lipid transfer protein LTP-24, drought ... 141 7e-33
gb|AAM21292.1|AF369931_1 lipid-transfer protein [Citrus sinensis] 140 9e-33
gb|AAL32039.1|AF439280_1 lipid transfer protein-like protein [Re... 139 3e-32
pir||T02038 phospholipid transfer protein - rice gi|2407271|gb|A... 138 5e-32
>sp|O23758|NLTP_CICAR NONSPECIFIC LIPID-TRANSFER PROTEIN PRECURSOR (LTP)
gi|2632171|emb|CAA05771.1| lipid transfer protein [Cicer
arietinum]
Length = 116
Score = 162 bits (409), Expect = 4e-39
Identities = 79/115 (68%), Positives = 91/115 (78%)
Frame = -2
Query: 519 SVKFSCMVVAICMALVAAPMAEAAISCGSVIGALTPCMPYLTGGPAPSPQCCAGVKNLNA 340
S+K C VA+ M +V APMAE+AI+CG V AL PC+ YL GGP PS QCC GV+NLN+
Sbjct: 3 SMKVVC--VALIMCIVIAPMAESAITCGRVDTALAPCLGYLQGGPGPSAQCCGGVRNLNS 60
Query: 339 AASTTPDRKTACGCLKNAAGSMPNLNAGNAAALPGKCGVNIPYKISTSTNCNTIK 175
AA TTPDR+ AC CLK+AAGS+ LNA NAAALPGKC VNIPYKISTSTNC TI+
Sbjct: 61 AAVTTPDRQAACNCLKSAAGSISRLNANNAAALPGKCVVNIPYKISTSTNCATIR 115
>pir||T12079 non-specific lipid transfer protein LTP-24, drought and ABA induced
- kidney bean gi|2347088|gb|AAC49860.1| non-specific
lipid transfer protein PvLTP-24 [Phaseolus vulgaris]
Length = 117
Score = 141 bits (355), Expect = 7e-33
Identities = 68/118 (57%), Positives = 86/118 (72%)
Frame = -2
Query: 528 MATSVKFSCMVVAICMALVAAPMAEAAISCGSVIGALTPCMPYLTGGPAPSPQCCAGVKN 349
MAT + +C+V +C+ ++ AP A AAISCG V +L C+P+LT G A CC+GV++
Sbjct: 1 MAT-LNSACVVAVLCLVVLTAPTAHAAISCGQVTSSLASCIPFLTKGGAVPASCCSGVRS 59
Query: 348 LNAAASTTPDRKTACGCLKNAAGSMPNLNAGNAAALPGKCGVNIPYKISTSTNCNTIK 175
LNAAA TTPDR+ C CLK+AAG++P NA NA LPGKCGV+I Y ISTSTNC TIK
Sbjct: 60 LNAAAKTTPDRQ-VCNCLKSAAGAIPGFNANNAGILPGKCGVSIHYNISTSTNCATIK 116
>gb|AAM21292.1|AF369931_1 lipid-transfer protein [Citrus sinensis]
Length = 115
Score = 140 bits (354), Expect = 9e-33
Identities = 67/108 (62%), Positives = 85/108 (78%), Gaps = 1/108 (0%)
Frame = -2
Query: 495 VAICMALVAAPMAEAAISCGSVIGALTPCMPYL-TGGPAPSPQCCAGVKNLNAAASTTPD 319
+ +CM LV P++ AI+CG V G+L PC+ +L +GGP P P CC GV++LNAAA TTPD
Sbjct: 10 LVLCM-LVTGPLSAQAITCGQVSGSLAPCIGFLRSGGPIPMP-CCNGVRSLNAAARTTPD 67
Query: 318 RKTACGCLKNAAGSMPNLNAGNAAALPGKCGVNIPYKISTSTNCNTIK 175
R+TAC CLK AAGS+PNLN NAA LPG CGV+IPYKISTST+C+ ++
Sbjct: 68 RQTACNCLKQAAGSIPNLNLNNAAGLPGACGVSIPYKISTSTDCSKVR 115
>gb|AAL32039.1|AF439280_1 lipid transfer protein-like protein [Retama raetam]
Length = 117
Score = 139 bits (350), Expect = 3e-32
Identities = 66/115 (57%), Positives = 83/115 (71%)
Frame = -2
Query: 519 SVKFSCMVVAICMALVAAPMAEAAISCGSVIGALTPCMPYLTGGPAPSPQCCAGVKNLNA 340
S+K +C VV ICM +V A AI+CG V+ LTPC+ YL G A QCC GVK L +
Sbjct: 3 SIKVAC-VVLICMVMVGAAPIAQAITCGQVVSNLTPCITYLQRGGAVPGQCCNGVKTLVS 61
Query: 339 AASTTPDRKTACGCLKNAAGSMPNLNAGNAAALPGKCGVNIPYKISTSTNCNTIK 175
+A TT D++TAC CLK+ A ++PN+N GNA +LPGKCGVN+PYKIS STNC +IK
Sbjct: 62 SAQTTADKQTACNCLKSTAATIPNINFGNAGSLPGKCGVNLPYKISPSTNCASIK 116
>pir||T02038 phospholipid transfer protein - rice gi|2407271|gb|AAB70538.1|
lipid transfer protein [Oryza sativa]
Length = 115
Score = 138 bits (348), Expect = 5e-32
Identities = 63/108 (58%), Positives = 82/108 (75%)
Frame = -2
Query: 501 MVVAICMALVAAPMAEAAISCGSVIGALTPCMPYLTGGPAPSPQCCAGVKNLNAAASTTP 322
++VA+ AL+ A A AAISCG V A++PC+ Y GG PS CC+GV+NLN+AA+TT
Sbjct: 7 LLVALVAALLLAAQAMAAISCGQVNSAVSPCLSYARGGSGPSAACCSGVRNLNSAATTTA 66
Query: 321 DRKTACGCLKNAAGSMPNLNAGNAAALPGKCGVNIPYKISTSTNCNTI 178
DR+TAC CLKN AGS+ LNAGNAA++P KCGV+IPY IS S C+++
Sbjct: 67 DRRTACNCLKNVAGSISGLNAGNAASIPSKCGVSIPYTISPSVYCSSV 114
Database: nr
Posted date: Apr 1, 2003 2:05 AM
Number of letters in database: 448,689,247
Number of sequences in database: 1,393,205
Lambda K H
0.318 0.135 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 541,056,180
Number of Sequences: 1393205
Number of extensions: 12222329
Number of successful extensions: 40754
Number of sequences better than 10.0: 296
Number of HSP's better than 10.0 without gapping: 37910
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 40522
length of database: 448,689,247
effective HSP length: 117
effective length of database: 285,684,262
effective search space used: 22854740960
frameshift window, decay const: 50, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
