Nr search
BLASTX 2.2.2 [Dec-14-2001]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= KMC005396A_C01 KMC005396A_c01
(1102 letters)
Database: nr
1,393,205 sequences; 448,689,247 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
ref|NP_181539.1| light-harvesting chlorophyll a/b binding protei... 409 e-113
gb|AAM65936.1| putative chlorophyll a/b binding protein [Arabido... 404 e-111
gb|AAD27878.1|AF139466_1 chlorophyll a/b binding protein CP29 [V... 392 e-108
prf||1908421A light-harvesting complex IIa protein; 390 e-107
gb|AAM12979.1| chlorophyll a/b-binding protein CP29 [Arabidopsis... 389 e-107
>ref|NP_181539.1| light-harvesting chlorophyll a/b binding protein; protein id:
At2g40100.1, supported by cDNA: 6454., supported by cDNA:
gi_17979324, supported by cDNA: gi_20465760, supported by
cDNA: gi_4741955 [Arabidopsis thaliana]
gi|25299025|pir||T52316 chlorophyll a/b-binding protein
CP29 [imported] - Arabidopsis thaliana
gi|4741956|gb|AAD28775.1|AF134128_1 Lhcb4:3 protein
[Arabidopsis thaliana] gi|17979325|gb|AAL49888.1|
putative chlorophyll a/b binding protein [Arabidopsis
thaliana] gi|20465761|gb|AAM20369.1| putative chlorophyll
a/b binding protein [Arabidopsis thaliana]
Length = 276
Score = 409 bits (1050), Expect = e-113
Identities = 200/272 (73%), Positives = 229/272 (83%), Gaps = 2/272 (0%)
Frame = -1
Query: 1015 AAATSHFFGTRLGNTTSDAGKFHALF--KFGTKKAPPAPKKKQVRVTPEEDRLVWFPGAQ 842
AAA S FG R+ + G+ A F FG KK P PKK + +V + DRLVWFPGA
Sbjct: 6 AAAASGIFGIRIQDPRPGTGRVQARFGFSFGKKKPAPPPKKSR-QVQDDGDRLVWFPGAN 64
Query: 841 RPEWLDGSYIGDRGFDPLGFARPAEYLQFDYDGLDQNLAKNLAGDIIGTRVETNEVQPTP 662
PEWLDGS IGDRGFDP G +PAEYLQ+D+DGLDQNLAKN+AGDIIG E++E++PTP
Sbjct: 65 PPEWLDGSMIGDRGFDPFGLGKPAEYLQYDFDGLDQNLAKNVAGDIIGIIQESSEIKPTP 124
Query: 661 FQPYAEVFGIQRFRECEVIHGRWAMLGALGALSVEALTGVAWQDAGKVELVDGSSYLGLP 482
FQPY EVFGIQRFRECE+IHGRWAMLG LGA++VEALTG+AWQDAGKVELV+GSSYLG P
Sbjct: 125 FQPYTEVFGIQRFRECELIHGRWAMLGTLGAIAVEALTGIAWQDAGKVELVEGSSYLGQP 184
Query: 481 LPFSITTLIWIEVLVIGYIEFQRNAELDPEKRLYPGGKFFDPLGLANDPEEKERLQLAEI 302
LPFS+TTLIWIEVLV+GYIEFQRN+ELDPEKR+YPGG +FDPLGLA DPE+ + L+LAEI
Sbjct: 185 LPFSLTTLIWIEVLVVGYIEFQRNSELDPEKRIYPGG-YFDPLGLAADPEKLDTLKLAEI 243
Query: 301 KHSRLAMVVFLIFAIQAAVTGKGPISFLATFN 206
KHSRLAMV FLIFA+QAA TGKGP+SFLATFN
Sbjct: 244 KHSRLAMVAFLIFALQAAFTGKGPVSFLATFN 275
>gb|AAM65936.1| putative chlorophyll a/b binding protein [Arabidopsis thaliana]
Length = 276
Score = 404 bits (1039), Expect = e-111
Identities = 199/272 (73%), Positives = 227/272 (83%), Gaps = 2/272 (0%)
Frame = -1
Query: 1015 AAATSHFFGTRLGNTTSDAGKFHALF--KFGTKKAPPAPKKKQVRVTPEEDRLVWFPGAQ 842
AAA S FG R+ + G+ A F FG KK P PKK + +V + DRLVWFPGA
Sbjct: 6 AAAASGIFGIRIQDPRPGTGRVQARFGFSFGKKKPAPPPKKSR-QVQDDGDRLVWFPGAN 64
Query: 841 RPEWLDGSYIGDRGFDPLGFARPAEYLQFDYDGLDQNLAKNLAGDIIGTRVETNEVQPTP 662
PEWLDGS IGDRGFDP G +PAEYLQ+D GLDQNLAKN+AGDIIG E++E++PTP
Sbjct: 65 PPEWLDGSMIGDRGFDPFGLGKPAEYLQYDXXGLDQNLAKNVAGDIIGIIQESSEIKPTP 124
Query: 661 FQPYAEVFGIQRFRECEVIHGRWAMLGALGALSVEALTGVAWQDAGKVELVDGSSYLGLP 482
FQPY EVFGIQRFRECE+IHGRWAMLG LGA++VEALTG+AWQDAGKVELV+GSSYLG P
Sbjct: 125 FQPYTEVFGIQRFRECELIHGRWAMLGTLGAIAVEALTGIAWQDAGKVELVEGSSYLGQP 184
Query: 481 LPFSITTLIWIEVLVIGYIEFQRNAELDPEKRLYPGGKFFDPLGLANDPEEKERLQLAEI 302
LPFS+TTLIWIEVLV+GYIEFQRN+ELDPEKR+YPGG +FDPLGLA DPE+ + L+LAEI
Sbjct: 185 LPFSLTTLIWIEVLVVGYIEFQRNSELDPEKRIYPGG-YFDPLGLAADPEKLDTLKLAEI 243
Query: 301 KHSRLAMVVFLIFAIQAAVTGKGPISFLATFN 206
KHSRLAMV FLIFA+QAA TGKGP+SFLATFN
Sbjct: 244 KHSRLAMVAFLIFALQAAFTGKGPVSFLATFN 275
>gb|AAD27878.1|AF139466_1 chlorophyll a/b binding protein CP29 [Vigna radiata]
Length = 290
Score = 392 bits (1006), Expect = e-108
Identities = 198/270 (73%), Positives = 221/270 (81%)
Frame = -1
Query: 1021 APAAATSHFFGTRLGNTTSDAGKFHALFKFGTKKAPPAPKKKQVRVTPEEDRLVWFPGAQ 842
A AAATS F GTRL + S +G+ A F FG+KK APKK V P DR +W+PGA+
Sbjct: 6 ATAAATSSFMGTRLLDAHSGSGRIQARFGFGSKKKA-APKK--VSKGPSTDRPLWYPGAK 62
Query: 841 RPEWLDGSYIGDRGFDPLGFARPAEYLQFDYDGLDQNLAKNLAGDIIGTRVETNEVQPTP 662
PEWLDGS +GD GFDP G +PAEYLQF+ D LDQNLAKN AG IIGTR E +V+ TP
Sbjct: 63 APEWLDGSLVGDYGFDPFGLGKPAEYLQFELDSLDQNLAKNEAGIIIGTRTEVADVKSTP 122
Query: 661 FQPYAEVFGIQRFRECEVIHGRWAMLGALGALSVEALTGVAWQDAGKVELVDGSSYLGLP 482
FQPY+EVFG+QRFRECE+IHGRWAML LGALSVE LTGV WQDAGKVELV+GSSYLG P
Sbjct: 123 FQPYSEVFGLQRFRECELIHGRWAMLATLGALSVEWLTGVTWQDAGKVELVEGSSYLGQP 182
Query: 481 LPFSITTLIWIEVLVIGYIEFQRNAELDPEKRLYPGGKFFDPLGLANDPEEKERLQLAEI 302
LPFSITTLIWIEVLVIGYIEFQRNAELDPEKRLYPGG +FDPLGLA+DPE+K LQLAEI
Sbjct: 183 LPFSITTLIWIEVLVIGYIEFQRNAELDPEKRLYPGGSYFDPLGLASDPEKKATLQLAEI 242
Query: 301 KHSRLAMVVFLIFAIQAAVTGKGPISFLAT 212
KH+RLAMV FL FA+QAA TGKGP++ AT
Sbjct: 243 KHARLAMVGFLGFAVQAAATGKGPLNNWAT 272
>prf||1908421A light-harvesting complex IIa protein;
Length = 286
Score = 390 bits (1002), Expect = e-107
Identities = 193/268 (72%), Positives = 218/268 (81%)
Frame = -1
Query: 1015 AAATSHFFGTRLGNTTSDAGKFHALFKFGTKKAPPAPKKKQVRVTPEEDRLVWFPGAQRP 836
AAA S F GTRL + G+ A F FG KKAPP K+ + P DR +WFPGAQ P
Sbjct: 6 AAAASTFLGTRLADPRPQNGRIVARFGFGKKKAPP----KKAKAPPTTDRPLWFPGAQAP 61
Query: 835 EWLDGSYIGDRGFDPLGFARPAEYLQFDYDGLDQNLAKNLAGDIIGTRVETNEVQPTPFQ 656
E+LDG+ +GD GFDP G +PAEYLQ+D D LDQNLA+NLAG+IIGTR E +V+ TPFQ
Sbjct: 62 EYLDGTLVGDYGFDPFGLGKPAEYLQYDVDSLDQNLAQNLAGEIIGTRFEDADVKSTPFQ 121
Query: 655 PYAEVFGIQRFRECEVIHGRWAMLGALGALSVEALTGVAWQDAGKVELVDGSSYLGLPLP 476
PYAEVFG+QRFRECE+IHGRWAML LGAL+VE LTGV WQDAGKVELVDGSSYLG PLP
Sbjct: 122 PYAEVFGLQRFRECELIHGRWAMLATLGALTVEWLTGVTWQDAGKVELVDGSSYLGQPLP 181
Query: 475 FSITTLIWIEVLVIGYIEFQRNAELDPEKRLYPGGKFFDPLGLANDPEEKERLQLAEIKH 296
F+ITTLIWIEVLVIGYIEFQRNAELDPE+RLYPGG +FDPLGLA DPE+KE LQLAEIKH
Sbjct: 182 FTITTLIWIEVLVIGYIEFQRNAELDPERRLYPGGSYFDPLGLAADPEKKETLQLAEIKH 241
Query: 295 SRLAMVVFLIFAIQAAVTGKGPISFLAT 212
+RLAMV FL FA+QAA TGKG ++ AT
Sbjct: 242 ARLAMVAFLGFAVQAAATGKGRLNNWAT 269
>gb|AAM12979.1| chlorophyll a/b-binding protein CP29 [Arabidopsis thaliana]
Length = 290
Score = 389 bits (999), Expect = e-107
Identities = 196/271 (72%), Positives = 217/271 (79%), Gaps = 1/271 (0%)
Frame = -1
Query: 1021 APAAATSHFFGTRLG-NTTSDAGKFHALFKFGTKKAPPAPKKKQVRVTPEEDRLVWFPGA 845
A AAA S GTR+ +G+F A+F FG KKA P KK + T DR VW+PGA
Sbjct: 6 AAAAAASSIMGTRVAPGIHPGSGRFTAVFGFGKKKAAP---KKSAKKTVTTDRPVWYPGA 62
Query: 844 QRPEWLDGSYIGDRGFDPLGFARPAEYLQFDYDGLDQNLAKNLAGDIIGTRVETNEVQPT 665
P+WLDGS +GD GFDP G +PAEYLQFD D LDQNLAKNLAGD+IGTR E + + T
Sbjct: 63 ISPDWLDGSLVGDYGFDPFGLGKPAEYLQFDIDSLDQNLAKNLAGDVIGTRTEAADAKST 122
Query: 664 PFQPYAEVFGIQRFRECEVIHGRWAMLGALGALSVEALTGVAWQDAGKVELVDGSSYLGL 485
PFQPY+EVFGIQRFRECE+IHGRWAML LGALSVE LTGV WQDAGKVELVDGSSYLG
Sbjct: 123 PFQPYSEVFGIQRFRECELIHGRWAMLATLGALSVEWLTGVTWQDAGKVELVDGSSYLGQ 182
Query: 484 PLPFSITTLIWIEVLVIGYIEFQRNAELDPEKRLYPGGKFFDPLGLANDPEEKERLQLAE 305
PLPFSI+TLIWIEVLVIGYIEFQRNAELD EKRLYPGGKFFDPLGLA DPE+ +LQLAE
Sbjct: 183 PLPFSISTLIWIEVLVIGYIEFQRNAELDSEKRLYPGGKFFDPLGLAADPEKTAQLQLAE 242
Query: 304 IKHSRLAMVVFLIFAIQAAVTGKGPISFLAT 212
IKH+RLAMV FL FA+QAA TGKGP++ AT
Sbjct: 243 IKHARLAMVAFLGFAVQAAATGKGPLNNWAT 273
Database: nr
Posted date: Apr 1, 2003 2:05 AM
Number of letters in database: 448,689,247
Number of sequences in database: 1,393,205
Lambda K H
0.318 0.135 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 1,080,418,474
Number of Sequences: 1393205
Number of extensions: 27335796
Number of successful extensions: 109467
Number of sequences better than 10.0: 570
Number of HSP's better than 10.0 without gapping: 89363
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 106999
length of database: 448,689,247
effective HSP length: 125
effective length of database: 274,538,622
effective search space used: 66163807902
frameshift window, decay const: 50, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
