Nr search
BLASTX 2.2.2 [Dec-14-2001]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= KMC005393A_C01 KMC005393A_c01
(558 letters)
Database: nr
1,393,205 sequences; 448,689,247 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
emb|CAA98185.1| RAB11I [Lotus japonicus] 207 5e-53
pir||T12097 GTP-binding protein, ras-like (clone vfa-ypt3a) - fa... 168 4e-41
sp|Q40521|R11B_TOBAC Ras-related protein Rab11B gi|7438406|pir||... 167 6e-41
ref|NP_200894.1| GTP-binding protein, putative; protein id: At5g... 167 1e-40
gb|AAF24551.2|AC007508_14 F1K23.21 [Arabidopsis thaliana] 166 2e-40
>emb|CAA98185.1| RAB11I [Lotus japonicus]
Length = 163
Score = 207 bits (528), Expect = 5e-53
Identities = 104/104 (100%), Positives = 104/104 (100%)
Frame = -3
Query: 556 LRDHTDANIVIMLVGNKADLRHLRAVPTEEATAFAERENTYFMETSALESLNVDNAFIEV 377
LRDHTDANIVIMLVGNKADLRHLRAVPTEEATAFAERENTYFMETSALESLNVDNAFIEV
Sbjct: 60 LRDHTDANIVIMLVGNKADLRHLRAVPTEEATAFAERENTYFMETSALESLNVDNAFIEV 119
Query: 376 LSEIYNVVSRKTLEKGNDPGALPQGQTINLGDVSAVKKPGCCSA 245
LSEIYNVVSRKTLEKGNDPGALPQGQTINLGDVSAVKKPGCCSA
Sbjct: 120 LSEIYNVVSRKTLEKGNDPGALPQGQTINLGDVSAVKKPGCCSA 163
>pir||T12097 GTP-binding protein, ras-like (clone vfa-ypt3a) - fava bean
(fragment) gi|452357|emb|CAA82708.1| guanine nucleotide
regulatory protein [Vicia faba] gi|1098294|prf||2115367B
small GTP-binding protein
Length = 207
Score = 168 bits (426), Expect = 4e-41
Identities = 85/107 (79%), Positives = 97/107 (90%), Gaps = 3/107 (2%)
Frame = -3
Query: 556 LRDHTDANIVIMLVGNKADLRHLRAVPTEEATAFAERENTYFMETSALESLNVDNAFIEV 377
LRDHTDANIV+MLVGNKADLRHLRAV TE++TAFAERENT+FMETSALESLNV++AF EV
Sbjct: 101 LRDHTDANIVVMLVGNKADLRHLRAVSTEDSTAFAERENTFFMETSALESLNVESAFTEV 160
Query: 376 LSEIYNVVSRKTLEKGNDPGALPQGQTINLG---DVSAVKKPGCCSA 245
L++IY VVS+K LE G+DP ALP+GQTIN+G DVSAVKK GCCSA
Sbjct: 161 LTQIYRVVSKKALEIGDDPAALPKGQTINVGSRDDVSAVKKGGCCSA 207
>sp|Q40521|R11B_TOBAC Ras-related protein Rab11B gi|7438406|pir||T03620 GTP-binding
protein Rab11b - common tobacco gi|623578|gb|AAA74113.1|
putative
Length = 217
Score = 167 bits (424), Expect = 6e-41
Identities = 86/106 (81%), Positives = 94/106 (88%), Gaps = 2/106 (1%)
Frame = -3
Query: 556 LRDHTDANIVIMLVGNKADLRHLRAVPTEEATAFAERENTYFMETSALESLNVDNAFIEV 377
LRDHTD NIVIMLVGNKADLRHLRAV TE+A AFAERENT+FMETSALESLNV+NAF EV
Sbjct: 112 LRDHTDQNIVIMLVGNKADLRHLRAVSTEDAKAFAERENTFFMETSALESLNVENAFTEV 171
Query: 376 LSEIYNVVSRKTLEKGNDPGALPQGQTINLG--DVSAVKKPGCCSA 245
L+EIY VV RK LE G+DP ALP+GQTIN+G DVSAVKK GCCS+
Sbjct: 172 LTEIYKVVCRKALEVGDDPAALPKGQTINVGKDDVSAVKKVGCCSS 217
>ref|NP_200894.1| GTP-binding protein, putative; protein id: At5g60860.1 [Arabidopsis
thaliana] gi|10176913|dbj|BAB10106.1| GTP-binding
protein, ras-like [Arabidopsis thaliana]
gi|26452359|dbj|BAC43265.1| putative GTP-binding protein
[Arabidopsis thaliana] gi|28950757|gb|AAO63302.1|
At5g60860 [Arabidopsis thaliana]
Length = 217
Score = 167 bits (422), Expect = 1e-40
Identities = 85/106 (80%), Positives = 94/106 (88%), Gaps = 3/106 (2%)
Frame = -3
Query: 556 LRDHTDANIVIMLVGNKADLRHLRAVPTEEATAFAERENTYFMETSALESLNVDNAFIEV 377
LRDHTDANIVIM VGNKADLRHLRAV TE+A AFAERENT+FMETSALES+NV+NAF EV
Sbjct: 111 LRDHTDANIVIMFVGNKADLRHLRAVSTEDAKAFAERENTFFMETSALESMNVENAFTEV 170
Query: 376 LSEIYNVVSRKTLEKGNDPGALPQGQTINLG---DVSAVKKPGCCS 248
LS+IY VVSRK L+ G+DP ALP+GQTIN+G DVSAVKK GCCS
Sbjct: 171 LSQIYRVVSRKALDIGDDPAALPKGQTINVGSKDDVSAVKKVGCCS 216
>gb|AAF24551.2|AC007508_14 F1K23.21 [Arabidopsis thaliana]
Length = 212
Score = 166 bits (419), Expect = 2e-40
Identities = 85/108 (78%), Positives = 96/108 (88%), Gaps = 4/108 (3%)
Frame = -3
Query: 556 LRDHTDANIVIMLVGNKADLRHLRAVPTEEATAFAERENTYFMETSALESLNVDNAFIEV 377
LRDHTDANIVIMLVGNKADLRHLRA+ TEEA AFAERENT+FMETSALE++NVDNAF EV
Sbjct: 105 LRDHTDANIVIMLVGNKADLRHLRAISTEEAKAFAERENTFFMETSALEAVNVDNAFTEV 164
Query: 376 LSEIYNVVSRKTLEKGNDP-GALPQGQTINLG---DVSAVKKPGCCSA 245
L++IY VVS+K LE G+DP ALP+GQ IN+G D+SAVKKPGCCSA
Sbjct: 165 LTQIYRVVSKKALEAGDDPTTALPKGQMINVGGRDDISAVKKPGCCSA 212
Database: nr
Posted date: Apr 1, 2003 2:05 AM
Number of letters in database: 448,689,247
Number of sequences in database: 1,393,205
Lambda K H
0.318 0.135 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 475,773,103
Number of Sequences: 1393205
Number of extensions: 10159158
Number of successful extensions: 29674
Number of sequences better than 10.0: 1124
Number of HSP's better than 10.0 without gapping: 28320
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 29486
length of database: 448,689,247
effective HSP length: 116
effective length of database: 287,077,467
effective search space used: 19808345223
frameshift window, decay const: 50, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
