Nr search
BLASTX 2.2.2 [Dec-14-2001]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= KMC005392A_C01 KMC005392A_c01
(784 letters)
Database: nr
1,393,205 sequences; 448,689,247 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
ref|NP_565006.1| Expressed protein; protein id: At1g70985.1, sup... 77 6e-20
ref|NP_173718.1| unknown protein; protein id: At1g23050.1 [Arabi... 81 1e-14
dbj|BAB92811.1| P0551A11.3 [Oryza sativa (japonica cultivar-grou... 72 9e-14
ref|NP_568708.1| expressed protein; protein id: At5g49280.1, sup... 58 5e-11
dbj|BAB39892.1| P0439B06.27 [Oryza sativa (japonica cultivar-gro... 63 4e-09
>ref|NP_565006.1| Expressed protein; protein id: At1g70985.1, supported by cDNA:
102374. [Arabidopsis thaliana]
gi|21536546|gb|AAM60878.1| unknown [Arabidopsis
thaliana]
Length = 135
Score = 77.0 bits (188), Expect(2) = 6e-20
Identities = 40/73 (54%), Positives = 44/73 (59%), Gaps = 8/73 (10%)
Frame = +2
Query: 392 GYYP--------YNPTPPYGGGAGDGNSGGGAGGGSFGTPPPPDPILPYFPFYYRKPPHQ 547
GYYP P+PPY GG N GG G PPPPDPILPYFPFYYRKPPHQ
Sbjct: 56 GYYPPPSSSNVPNYPSPPYYGG----NPSGGYNG-----PPPPDPILPYFPFYYRKPPHQ 106
Query: 548 TEDQSSASTTLVK 586
T+ SS+ + VK
Sbjct: 107 TDQSSSSMKSTVK 119
Score = 42.7 bits (99), Expect(2) = 6e-20
Identities = 26/64 (40%), Positives = 33/64 (50%)
Frame = +3
Query: 195 HLLPLSVLLSIILLCGPGTTRSDNPCAYPCYPSPPIVGGTTPTTPSGSTTPQTPPQTGLT 374
HL+ L + S+++ P T S PC YPC P P + GT T P+G P TG
Sbjct: 7 HLISLLFVFSLVMF--PFITISQTPCPYPCNPLP--IAGTGSTQPAG----YYPQPTGY- 57
Query: 375 YPPP 386
YPPP
Sbjct: 58 YPPP 61
>ref|NP_173718.1| unknown protein; protein id: At1g23050.1 [Arabidopsis thaliana]
gi|25518649|pir||F86364 hypothetical protein F19G10.1 -
Arabidopsis thaliana gi|2462821|gb|AAB72156.1|
hypothetical protein [Arabidopsis thaliana]
gi|2829906|gb|AAC00614.1| Hypothetical protein
[Arabidopsis thaliana]
Length = 161
Score = 81.3 bits (199), Expect = 1e-14
Identities = 49/109 (44%), Positives = 61/109 (55%), Gaps = 5/109 (4%)
Frame = +2
Query: 335 LNYTTDTATNRVNIPTTVQGYYPYNPTPPYGGGAGDGNSGGGAGGGSFGTPPPPDPILPY 514
+NY T A N N P V G P P+PPYGGG + G SF PPPP+ ILPY
Sbjct: 62 VNYPTP-AGNLPNYPPPV-GNIPNYPSPPYGGG--------DSSGSSFYGPPPPNAILPY 111
Query: 515 FPFYYRKPPHQTEDQSSASTTLV--KWTGMISTTTTSL---FLSSLLFV 646
FP+Y+RKPPHQT+ SS+S V KWT I + L ++LF+
Sbjct: 112 FPYYFRKPPHQTDQTSSSSHVAVPGKWTVRIVAVANLVVVGVLGNILFI 160
Score = 55.1 bits (131), Expect = 1e-06
Identities = 29/63 (46%), Positives = 38/63 (60%)
Frame = +3
Query: 198 LLPLSVLLSIILLCGPGTTRSDNPCAYPCYPSPPIVGGTTPTTPSGSTTPQTPPQTGLTY 377
LL L+++ L+ P SD PC YPCYP+PPI GG+ +TPS + P PP G+ Y
Sbjct: 8 LLFLTLIFVFSLVYFPYLVISDTPCPYPCYPTPPIGGGS--STPSMTQPPPYPP-PGVNY 64
Query: 378 PPP 386
P P
Sbjct: 65 PTP 67
>dbj|BAB92811.1| P0551A11.3 [Oryza sativa (japonica cultivar-group)]
gi|21328105|dbj|BAC00686.1| OJ1116_C07.3 [Oryza sativa
(japonica cultivar-group)]
Length = 195
Score = 71.6 bits (174), Expect(2) = 9e-14
Identities = 39/84 (46%), Positives = 46/84 (54%), Gaps = 2/84 (2%)
Frame = +2
Query: 395 YYPYNPTPPYGGGAGDGNSG--GGAGGGSFGTPPPPDPILPYFPFYYRKPPHQTEDQSSA 568
YYP PP GGG G G GG GGG++ TPPPP+P LPYFPFYY PP S +
Sbjct: 112 YYP----PPTGGGGGGGGGWQQGGGGGGAYPTPPPPNPFLPYFPFYYYSPPPPFY-SSGS 166
Query: 569 STTLVKWTGMISTTTTSLFLSSLL 640
S V + T +L L+ LL
Sbjct: 167 SVAGVSAISSAAAATFTLLLTGLL 190
Score = 27.3 bits (59), Expect(2) = 9e-14
Identities = 14/33 (42%), Positives = 15/33 (45%)
Frame = +3
Query: 261 DNPCAYPCYPSPPIVGGTTPTTPSGSTTPQTPP 359
DNPC YP PP P + TPQ PP
Sbjct: 47 DNPCNPSYYPPPP--------PPVVTPTPQCPP 71
>ref|NP_568708.1| expressed protein; protein id: At5g49280.1, supported by cDNA:
147765. [Arabidopsis thaliana]
gi|10177157|dbj|BAB10346.1| gene_id:K21P3.16~unknown
protein [Arabidopsis thaliana]
gi|21553492|gb|AAM62585.1| extensin like protein
[Arabidopsis thaliana]
Length = 162
Score = 57.8 bits (138), Expect(2) = 5e-11
Identities = 25/42 (59%), Positives = 29/42 (68%)
Frame = +2
Query: 416 PPYGGGAGDGNSGGGAGGGSFGTPPPPDPILPYFPFYYRKPP 541
PPYGGG G G G++ TPPPP+PI+PYFPFYY PP
Sbjct: 96 PPYGGG-GQGYYYPPPYSGNYPTPPPPNPIVPYFPFYYHTPP 136
Score = 32.0 bits (71), Expect(2) = 5e-11
Identities = 29/85 (34%), Positives = 37/85 (43%), Gaps = 21/85 (24%)
Frame = +3
Query: 195 HLLPLSVLLSIILLCGPGTTRS-------------DNPCA----YPCYPSPPIVGGTTPT 323
HL LS L+ ++L+ T S DNPC+ P PSPP +TPT
Sbjct: 5 HLYTLSTLVVMLLVSVTPTVTSKDEVVSCTMCSSCDNPCSPVQSSPPPPSPPPP--STPT 62
Query: 324 TPSGSTTPQTPPQTG----LTYPPP 386
T P +PP +G YPPP
Sbjct: 63 T--ACPPPPSPPSSGGGSSYYYPPP 85
>dbj|BAB39892.1| P0439B06.27 [Oryza sativa (japonica cultivar-group)]
gi|14587258|dbj|BAB61176.1| OSJNBb0032H19.6 [Oryza
sativa (japonica cultivar-group)]
Length = 159
Score = 63.2 bits (152), Expect = 4e-09
Identities = 34/92 (36%), Positives = 49/92 (52%), Gaps = 7/92 (7%)
Frame = +2
Query: 287 PFTTNRGRHHSYNSFRLNYTTDTATNRVNIPTTVQGYYPYNPTPPYGGGAG-------DG 445
P TT+ S S +Y ++++ N P + Y+ Y PP GGG G
Sbjct: 39 PVTTDCPPPPSTPSSGYSYPPPSSSSS-NTPPSSSSYWNY--PPPQGGGGGYIPYYQPPA 95
Query: 446 NSGGGAGGGSFGTPPPPDPILPYFPFYYRKPP 541
GGG GG ++ PPPP+PI+P++P+YYR PP
Sbjct: 96 GGGGGGGGFNYPAPPPPNPIVPWYPWYYRSPP 127
Database: nr
Posted date: Apr 1, 2003 2:05 AM
Number of letters in database: 448,689,247
Number of sequences in database: 1,393,205
Lambda K H
0.318 0.135 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 793,914,894
Number of Sequences: 1393205
Number of extensions: 22781669
Number of successful extensions: 303573
Number of sequences better than 10.0: 1487
Number of HSP's better than 10.0 without gapping: 101590
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 242193
length of database: 448,689,247
effective HSP length: 121
effective length of database: 280,111,442
effective search space used: 38935490438
frameshift window, decay const: 50, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
