Nr search
BLASTX 2.2.2 [Dec-14-2001]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= KMC005391A_C01 KMC005391A_c01
(644 letters)
Database: nr
1,393,205 sequences; 448,689,247 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
sp|Q9FHH8|COLF_ARATH Zinc finger protein constans-like 15 gi|975... 118 6e-26
ref|NP_568863.1| CONSTANS-like B-box zinc finger protein-like; p... 117 1e-25
gb|AAM65968.1| CONSTANS-like B-box zinc finger protein-like [Ara... 117 1e-25
ref|NP_197875.1| CONSTANS B-box zinc finger family protein; prot... 115 4e-25
pir||T08125 CONSTANS protein homolog COL1 - radish gi|3341723|gb... 103 3e-21
>sp|Q9FHH8|COLF_ARATH Zinc finger protein constans-like 15 gi|9759262|dbj|BAB09583.1|
CONSTANS-like B-box zinc finger protein-like
[Arabidopsis thaliana]
Length = 351
Score = 118 bits (296), Expect = 6e-26
Identities = 64/113 (56%), Positives = 84/113 (73%), Gaps = 7/113 (6%)
Frame = -3
Query: 633 SQSVSSCSMEVGVVPEGSTSAS---TVVSEISNGGGGYERAVDREAKVMRYREKRKNRRF 463
SQSVS+ S+E GVVP+G+T+ S + ++ + GG ++DREA+V+RYREKRKNR+F
Sbjct: 238 SQSVSTSSIEYGVVPDGNTNNSVNRSTITSSTTGGDHQASSMDREARVLRYREKRKNRKF 297
Query: 462 EKTIRYASRKAYAESRPRIKGRFAKRSDDNNH----ADLPAAGATGYDGLVPT 316
EKTIRYASRKAYAESRPRIKGRFAKR++ N + + A+ A G+VPT
Sbjct: 298 EKTIRYASRKAYAESRPRIKGRFAKRTETENDDIFLSHVYASAAHAQYGVVPT 350
>ref|NP_568863.1| CONSTANS-like B-box zinc finger protein-like; protein id:
At5g57660.1, supported by cDNA: 6639., supported by
cDNA: gi_16323056, supported by cDNA: gi_19347870,
supported by cDNA: gi_21281082 [Arabidopsis thaliana]
gi|16323057|gb|AAL15263.1| AT5g57660/MRI1_1 [Arabidopsis
thaliana] gi|19347871|gb|AAL85993.1| putative CONSTANS
B-box zinc finger protein [Arabidopsis thaliana]
gi|21281083|gb|AAM45054.1| putative CONSTANS B-box zinc
finger protein [Arabidopsis thaliana]
Length = 355
Score = 117 bits (293), Expect = 1e-25
Identities = 64/115 (55%), Positives = 84/115 (72%), Gaps = 7/115 (6%)
Frame = -3
Query: 639 SQSQSVSSCSMEVGVVPEGSTSAS---TVVSEISNGGGGYERAVDREAKVMRYREKRKNR 469
S S SVS+ S+E GVVP+G+T+ S + ++ + GG ++DREA+V+RYREKRKNR
Sbjct: 240 SVSHSVSTSSIEYGVVPDGNTNNSVNRSTITSSTTGGDHQASSMDREARVLRYREKRKNR 299
Query: 468 RFEKTIRYASRKAYAESRPRIKGRFAKRSDDNNH----ADLPAAGATGYDGLVPT 316
+FEKTIRYASRKAYAESRPRIKGRFAKR++ N + + A+ A G+VPT
Sbjct: 300 KFEKTIRYASRKAYAESRPRIKGRFAKRTETENDDIFLSHVYASAAHAQYGVVPT 354
>gb|AAM65968.1| CONSTANS-like B-box zinc finger protein-like [Arabidopsis thaliana]
Length = 355
Score = 117 bits (293), Expect = 1e-25
Identities = 64/115 (55%), Positives = 84/115 (72%), Gaps = 7/115 (6%)
Frame = -3
Query: 639 SQSQSVSSCSMEVGVVPEGSTSAS---TVVSEISNGGGGYERAVDREAKVMRYREKRKNR 469
S S SVS+ S+E GVVP+G+T+ S + ++ + GG ++DREA+V+RYREKRKNR
Sbjct: 240 SVSHSVSTSSIEYGVVPDGNTNNSVNRSTITSSTTGGDHQASSMDREARVLRYREKRKNR 299
Query: 468 RFEKTIRYASRKAYAESRPRIKGRFAKRSDDNNH----ADLPAAGATGYDGLVPT 316
+FEKTIRYASRKAYAESRPRIKGRFAKR++ N + + A+ A G+VPT
Sbjct: 300 KFEKTIRYASRKAYAESRPRIKGRFAKRTETENDDIFLSHVYASAAHAQYGVVPT 354
>ref|NP_197875.1| CONSTANS B-box zinc finger family protein; protein id: At5g24930.1,
supported by cDNA: gi_15450658 [Arabidopsis thaliana]
Length = 362
Score = 115 bits (289), Expect = 4e-25
Identities = 70/117 (59%), Positives = 80/117 (67%), Gaps = 11/117 (9%)
Frame = -3
Query: 633 SQSVSSCSMEVGVVPEGSTSASTVVS----EISNGGGGYERAV-----DREAKVMRYREK 481
S SVSS SMEVGVVP+G + A S G +RAV +REA+VMRYREK
Sbjct: 246 SHSVSSSSMEVGVVPDGGSVADVSYPYGGPATSGADPGTQRAVPLTSAEREARVMRYREK 305
Query: 480 RKNRRFEKTIRYASRKAYAESRPRIKGRFAKRSDDNNHADLPAAGA--TGYDGLVPT 316
RKNR+FEKTIRYASRKAYAE RPRIKGRFAKR+D N D+ G +G+ GLVPT
Sbjct: 306 RKNRKFEKTIRYASRKAYAEMRPRIKGRFAKRTDTNESNDVVGHGGIFSGF-GLVPT 361
>pir||T08125 CONSTANS protein homolog COL1 - radish gi|3341723|gb|AAC35496.1|
CONSTANS-like 1 protein [Raphanus sativus]
Length = 307
Score = 103 bits (256), Expect = 3e-21
Identities = 59/109 (54%), Positives = 76/109 (69%), Gaps = 3/109 (2%)
Frame = -3
Query: 633 SQSVSSCSMEVGVVPEG---STSASTVVSEISNGGGGYERAVDREAKVMRYREKRKNRRF 463
+Q+VSS S+EV +VPEG +T+ +T ++S +REA+V+RYREKRKNR+F
Sbjct: 206 NQTVSSTSLEVPLVPEGGAVTTTNATPAVQLS--------PAEREARVLRYREKRKNRKF 257
Query: 462 EKTIRYASRKAYAESRPRIKGRFAKRSDDNNHADLPAAGATGYDGLVPT 316
EKTIRYASRKAYAE RPRIKGRFAKR+D + G G G+VP+
Sbjct: 258 EKTIRYASRKAYAEVRPRIKGRFAKRTDSRVNDGGGDVGVYGGFGVVPS 306
Database: nr
Posted date: Apr 1, 2003 2:05 AM
Number of letters in database: 448,689,247
Number of sequences in database: 1,393,205
Lambda K H
0.318 0.135 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 567,721,825
Number of Sequences: 1393205
Number of extensions: 13036503
Number of successful extensions: 72978
Number of sequences better than 10.0: 335
Number of HSP's better than 10.0 without gapping: 59411
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 70620
length of database: 448,689,247
effective HSP length: 118
effective length of database: 284,291,057
effective search space used: 27291941472
frameshift window, decay const: 50, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
