Nr search
BLASTX 2.2.2 [Dec-14-2001]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= KMC005386A_C01 KMC005386A_c01
(445 letters)
Database: nr
1,393,205 sequences; 448,689,247 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
ref|NP_199251.1| FAD-linked oxidoreductase family; protein id: A... 49 6e-12
ref|NP_199252.1| FAD-linked oxidoreductase family; protein id: A... 48 2e-11
gb|AAL24314.1| berberine bridge enzyme-like protein [Arabidopsis... 48 3e-11
ref|NP_174363.1| FAD-linked oxidoreductase family; protein id: A... 49 8e-11
gb|AAD32926.1|AC004135_1 T17H7.1 [Arabidopsis thaliana] 49 1e-10
>ref|NP_199251.1| FAD-linked oxidoreductase family; protein id: At5g44380.1,
supported by cDNA: gi_20260455 [Arabidopsis thaliana]
gi|10176893|dbj|BAB10123.1| berberine bridge enzyme-like
protein [Arabidopsis thaliana]
gi|20260456|gb|AAM13126.1| berberine bridge enzyme-like
protein [Arabidopsis thaliana]
Length = 541
Score = 49.3 bits (116), Expect(2) = 6e-12
Identities = 23/48 (47%), Positives = 33/48 (67%), Gaps = 1/48 (2%)
Frame = -1
Query: 445 YSYTAPYLSKYPREAYVNYRDLDIGMNQKHG-TSSSQASLFGF*VFQG 305
Y+Y APY+S PR+AYVNYRDLD G N+ + + +A ++G F+G
Sbjct: 465 YNYMAPYVSSNPRQAYVNYRDLDFGQNKNNAKVNFIEAKIWGPKYFKG 512
Score = 40.8 bits (94), Expect(2) = 6e-12
Identities = 16/24 (66%), Positives = 21/24 (86%)
Frame = -2
Query: 324 GSKYFKGNFNRLVMVKSRVDPSHF 253
G KYFKGNF+RLV +K++VDP +F
Sbjct: 506 GPKYFKGNFDRLVKIKTKVDPENF 529
>ref|NP_199252.1| FAD-linked oxidoreductase family; protein id: At5g44390.1,
supported by cDNA: gi_16648924 [Arabidopsis thaliana]
gi|10176894|dbj|BAB10124.1| berberine bridge enzyme-like
protein [Arabidopsis thaliana]
Length = 542
Score = 48.1 bits (113), Expect(2) = 2e-11
Identities = 21/42 (50%), Positives = 30/42 (71%), Gaps = 1/42 (2%)
Frame = -1
Query: 445 YSYTAPYLSKYPREAYVNYRDLDIGMNQKHGTSS-SQASLFG 323
Y Y PY+S PR+AYVNYRDLD+G N+ + S+ +A ++G
Sbjct: 466 YGYMTPYVSSNPRQAYVNYRDLDLGQNKDNSKSNFIEAKIWG 507
Score = 40.0 bits (92), Expect(2) = 2e-11
Identities = 16/24 (66%), Positives = 20/24 (82%)
Frame = -2
Query: 324 GSKYFKGNFNRLVMVKSRVDPSHF 253
G+ YFK NFNRLV +KS+VDP +F
Sbjct: 507 GANYFKDNFNRLVRIKSKVDPDNF 530
>gb|AAL24314.1| berberine bridge enzyme-like protein [Arabidopsis thaliana]
gi|23198322|gb|AAN15688.1| berberine bridge enzyme-like
protein [Arabidopsis thaliana]
Length = 542
Score = 47.8 bits (112), Expect(2) = 3e-11
Identities = 19/34 (55%), Positives = 25/34 (72%)
Frame = -1
Query: 445 YSYTAPYLSKYPREAYVNYRDLDIGMNQKHGTSS 344
Y Y PY+S PR+AYVNYRDLD+G N+ + S+
Sbjct: 466 YGYMTPYVSSNPRQAYVNYRDLDLGQNKDNSKSN 499
Score = 40.0 bits (92), Expect(2) = 3e-11
Identities = 16/24 (66%), Positives = 20/24 (82%)
Frame = -2
Query: 324 GSKYFKGNFNRLVMVKSRVDPSHF 253
G+ YFK NFNRLV +KS+VDP +F
Sbjct: 507 GANYFKDNFNRLVRIKSKVDPDNF 530
>ref|NP_174363.1| FAD-linked oxidoreductase family; protein id: At1g30760.1,
supported by cDNA: gi_16323166, supported by cDNA:
gi_16323166 [Arabidopsis thaliana]
gi|16323167|gb|AAL15318.1| At1g30760/T5I8_22
[Arabidopsis thaliana] gi|28416457|gb|AAO42759.1|
At1g30760/T5I8_22 [Arabidopsis thaliana]
Length = 534
Score = 48.5 bits (114), Expect(2) = 8e-11
Identities = 26/47 (55%), Positives = 30/47 (63%)
Frame = -1
Query: 445 YSYTAPYLSKYPREAYVNYRDLDIGMNQKHGTSSSQASLFGF*VFQG 305
YSY Y+SK PR AYVNYRDLD+GMN K S A +G F+G
Sbjct: 463 YSYMEQYVSKSPRSAYVNYRDLDLGMNGK----GSDAREWGNRYFKG 505
Score = 37.7 bits (86), Expect(2) = 8e-11
Identities = 14/24 (58%), Positives = 20/24 (83%)
Frame = -2
Query: 324 GSKYFKGNFNRLVMVKSRVDPSHF 253
G++YFKGNF RLV +K++ DP +F
Sbjct: 499 GNRYFKGNFERLVEIKAKFDPENF 522
>gb|AAD32926.1|AC004135_1 T17H7.1 [Arabidopsis thaliana]
Length = 117
Score = 48.5 bits (114), Expect(2) = 1e-10
Identities = 26/47 (55%), Positives = 30/47 (63%)
Frame = -1
Query: 445 YSYTAPYLSKYPREAYVNYRDLDIGMNQKHGTSSSQASLFGF*VFQG 305
YSY Y+SK PR AYVNYRDLD+GMN K S A +G F+G
Sbjct: 46 YSYMEQYVSKSPRSAYVNYRDLDLGMNGK----GSDAREWGNRYFKG 88
Score = 37.7 bits (86), Expect(2) = 1e-10
Identities = 14/24 (58%), Positives = 20/24 (83%)
Frame = -2
Query: 324 GSKYFKGNFNRLVMVKSRVDPSHF 253
G++YFKGNF RLV +K++ DP +F
Sbjct: 82 GNRYFKGNFERLVEIKAKFDPENF 105
Database: nr
Posted date: Apr 1, 2003 2:05 AM
Number of letters in database: 448,689,247
Number of sequences in database: 1,393,205
Lambda K H
0.318 0.135 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 356,851,575
Number of Sequences: 1393205
Number of extensions: 7026261
Number of successful extensions: 14233
Number of sequences better than 10.0: 61
Number of HSP's better than 10.0 without gapping: 13993
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 14229
length of database: 448,689,247
effective HSP length: 123
effective length of database: 277,325,032
effective search space used: 6655800768
frameshift window, decay const: 50, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
