Nr search
BLASTX 2.2.2 [Dec-14-2001]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= KMC005379A_C01 KMC005379A_c01
(596 letters)
Database: nr
1,393,205 sequences; 448,689,247 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
ref|NP_567484.1| expressed protein; protein id: At4g16120.1, sup... 61 1e-08
dbj|BAC41936.1| GPI-anchored protein [Arabidopsis thaliana] gi|2... 61 1e-08
ref|NP_199738.1| putative protein; protein id: At5g49270.1 [Arab... 55 9e-07
ref|NP_188694.1| hypothetical protein; protein id: At3g20580.1 [... 54 2e-06
dbj|BAB01166.1| emb|CAB38841.1~gene_id:K10D20.12~similar to unkn... 54 2e-06
>ref|NP_567484.1| expressed protein; protein id: At4g16120.1, supported by cDNA:
17019. [Arabidopsis thaliana] gi|7485129|pir||E71427
hypothetical protein - Arabidopsis thaliana
gi|2244970|emb|CAB10391.1| hypothetical protein
[Arabidopsis thaliana] gi|2326365|emb|CAA74765.1|
putative cell wall protein [Arabidopsis thaliana]
gi|7268361|emb|CAB78654.1| hypothetical protein
[Arabidopsis thaliana]
Length = 661
Score = 60.8 bits (146), Expect = 1e-08
Identities = 32/54 (59%), Positives = 37/54 (68%), Gaps = 2/54 (3%)
Frame = -3
Query: 594 PGINVVRGDGFPSKVFFNGEECSLPSVIP--SSGFRKGFPRATLAFLTLLWIVL 439
PGINV GDGFPSKVFFNGEECSLP+++P SS RK LA L ++L
Sbjct: 606 PGINVPGGDGFPSKVFFNGEECSLPTILPMRSSQHRKHISVFLLALPVLALLIL 659
>dbj|BAC41936.1| GPI-anchored protein [Arabidopsis thaliana]
gi|29028918|gb|AAO64838.1| At4g16120 [Arabidopsis
thaliana]
Length = 515
Score = 60.8 bits (146), Expect = 1e-08
Identities = 32/54 (59%), Positives = 37/54 (68%), Gaps = 2/54 (3%)
Frame = -3
Query: 594 PGINVVRGDGFPSKVFFNGEECSLPSVIP--SSGFRKGFPRATLAFLTLLWIVL 439
PGINV GDGFPSKVFFNGEECSLP+++P SS RK LA L ++L
Sbjct: 460 PGINVPGGDGFPSKVFFNGEECSLPTILPMRSSQHRKHISVFLLALPVLALLIL 513
>ref|NP_199738.1| putative protein; protein id: At5g49270.1 [Arabidopsis thaliana]
gi|10177156|dbj|BAB10345.1| contains similarity to
phytochelatin synthetase~gene_id:K21P3.15 [Arabidopsis
thaliana]
Length = 663
Score = 54.7 bits (130), Expect = 9e-07
Identities = 26/47 (55%), Positives = 33/47 (69%), Gaps = 1/47 (2%)
Frame = -3
Query: 594 PGINVVRGDGFPSKVFFNGEECSLPSVIP-SSGFRKGFPRATLAFLT 457
PGINV DGFP+KV FNGEEC LP ++P +SG R+ L+F+T
Sbjct: 607 PGINVAERDGFPAKVIFNGEECLLPDLLPMASGGRRNGAITVLSFIT 653
>ref|NP_188694.1| hypothetical protein; protein id: At3g20580.1 [Arabidopsis
thaliana]
Length = 633
Score = 53.9 bits (128), Expect = 2e-06
Identities = 28/55 (50%), Positives = 36/55 (64%), Gaps = 8/55 (14%)
Frame = -3
Query: 591 GINVVRGDGFPSKVFFNGEECSLPSVIP--SSGFRKG------FPRATLAFLTLL 451
G+N+ GDGFP+K+FFNGEEC+LP P SSG R+G F AT+A L+
Sbjct: 577 GLNIPEGDGFPTKLFFNGEECALPKHFPKKSSGHRRGISVSMSFVFATIAAFALM 631
>dbj|BAB01166.1| emb|CAB38841.1~gene_id:K10D20.12~similar to unknown protein
[Arabidopsis thaliana] gi|26452233|dbj|BAC43204.1|
GPI-anchored protein [Arabidopsis thaliana]
gi|29029016|gb|AAO64887.1| At3g20580 [Arabidopsis
thaliana]
Length = 672
Score = 53.9 bits (128), Expect = 2e-06
Identities = 28/55 (50%), Positives = 36/55 (64%), Gaps = 8/55 (14%)
Frame = -3
Query: 591 GINVVRGDGFPSKVFFNGEECSLPSVIP--SSGFRKG------FPRATLAFLTLL 451
G+N+ GDGFP+K+FFNGEEC+LP P SSG R+G F AT+A L+
Sbjct: 616 GLNIPEGDGFPTKLFFNGEECALPKHFPKKSSGHRRGISVSMSFVFATIAAFALM 670
Database: nr
Posted date: Apr 1, 2003 2:05 AM
Number of letters in database: 448,689,247
Number of sequences in database: 1,393,205
Lambda K H
0.318 0.135 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 490,814,690
Number of Sequences: 1393205
Number of extensions: 10195935
Number of successful extensions: 23699
Number of sequences better than 10.0: 20
Number of HSP's better than 10.0 without gapping: 22986
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 23690
length of database: 448,689,247
effective HSP length: 117
effective length of database: 285,684,262
effective search space used: 23140425222
frameshift window, decay const: 50, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
