Nr search
BLASTX 2.2.2 [Dec-14-2001]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= KMC005378A_C01 KMC005378A_c01
(588 letters)
Database: nr
1,393,205 sequences; 448,689,247 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
ref|NP_194912.1| putative protein; protein id: At4g31840.1, supp... 153 1e-36
ref|NP_180078.1| similar to early nodulins; protein id: At2g2506... 153 2e-36
ref|NP_197891.1| phytocyanin-related protein-like; protein id: A... 144 1e-33
pir||JC7196 phytocyanin-related protein Pn14 - common morning-glory 142 3e-33
dbj|BAA90481.1| phytocyanin-related protein [Ipomoea nil] 142 3e-33
>ref|NP_194912.1| putative protein; protein id: At4g31840.1, supported by cDNA:
6308., supported by cDNA: gi_19698954 [Arabidopsis
thaliana] gi|7485378|pir||T06306 hypothetical protein
F11C18.40 - Arabidopsis thaliana
gi|4584523|emb|CAB40754.1| putative protein [Arabidopsis
thaliana] gi|7270087|emb|CAB79902.1| putative protein
[Arabidopsis thaliana] gi|19698955|gb|AAL91213.1|
putative protein [Arabidopsis thaliana]
gi|21593998|gb|AAM65916.1| similar to early nodulins
[Arabidopsis thaliana] gi|27311879|gb|AAO00905.1|
putative protein [Arabidopsis thaliana]
Length = 177
Score = 153 bits (387), Expect = 1e-36
Identities = 78/148 (52%), Positives = 103/148 (68%), Gaps = 1/148 (0%)
Frame = -3
Query: 586 PSSESDSLYKWAQRDRFQIGDHLVWKYDGGKDSVLEVSKEDYEKCNISSPIKEYNDGNTK 407
P S S S +WAQ+ RF++GD +V+KY+ GKDSVL+V++E YEKCN +SP Y DGNTK
Sbjct: 39 PPSSSFSFNEWAQKARFKVGDFIVFKYEAGKDSVLQVTREAYEKCNTTSPKASYTDGNTK 98
Query: 406 VKLDHPGPFYFISGAKGHCEKGQKLVVVVLSPRGGRNTGTDVSPAPASAPVPTGFEGPAV 227
VKLD GP YF+SG +GHC+KGQKL +VV++PR + SP P+ P+ F+GPAV
Sbjct: 99 VKLDQAGPVYFVSGTEGHCQKGQKLRLVVITPR-----NSAFSPGPS----PSEFDGPAV 149
Query: 226 APSPVSSATALQGGLVMLMG-VLAMWVF 146
AP+ S A L GG ++ G VL +W F
Sbjct: 150 APT--SGAAKLAGGFSVVFGLVLGLWAF 175
>ref|NP_180078.1| similar to early nodulins; protein id: At2g25060.1 [Arabidopsis
thaliana] gi|25282802|pir||G84643 similar to early
nodulins [imported] - Arabidopsis thaliana
gi|4559346|gb|AAD23007.1| similar to early nodulins
[Arabidopsis thaliana]
Length = 176
Score = 153 bits (386), Expect = 2e-36
Identities = 79/145 (54%), Positives = 102/145 (69%), Gaps = 1/145 (0%)
Frame = -3
Query: 586 PSSESDSLYKWAQRDRFQIGDHLVWKYDGGKDSVLEVSKEDYEKCNISSPIKEYNDGNTK 407
P S S S +WAQ+ RF++GD +V++Y+ GKDSVLEV+KE Y CN ++P+ Y DG TK
Sbjct: 37 PPSSSYSFTEWAQKARFKVGDFIVFRYESGKDSVLEVTKEAYNSCNTTNPLANYTDGETK 96
Query: 406 VKLDHPGPFYFISGAKGHCEKGQKLVVVVLSPRGGRNTGTDVSPAPASAPVPTGFE-GPA 230
VKLD GPFYFISGA GHCEKGQKL +VV+SPR + +SPAP+ P FE GPA
Sbjct: 97 VKLDRSGPFYFISGANGHCEKGQKLSLVVISPR-----HSVISPAPS----PVEFEDGPA 147
Query: 229 VAPSPVSSATALQGGLVMLMGVLAM 155
+AP+P+S + L G V+L VL +
Sbjct: 148 LAPAPISGSVRLGGCYVVLGLVLGL 172
>ref|NP_197891.1| phytocyanin-related protein-like; protein id: At5g25090.1,
supported by cDNA: 270205. [Arabidopsis thaliana]
Length = 186
Score = 144 bits (362), Expect = 1e-33
Identities = 71/146 (48%), Positives = 102/146 (69%), Gaps = 2/146 (1%)
Frame = -3
Query: 586 PSSESDSLYKWAQRDRFQIGDHLVWKYDGGKDSVLEVSKEDYEKCNISSPIKEYNDGNTK 407
PSS S+SL KWA+ RF++GD LVWKYD KDSVL+V+K+ Y CN ++P Y++G+TK
Sbjct: 38 PSSPSESLNKWAESLRFRVGDTLVWKYDEEKDSVLQVTKDAYINCNTTNPAANYSNGDTK 97
Query: 406 VKLDHPGPFYFISGAKGHCEKGQKLVVVVLSPRGGRNTGTDVSPAPASAPVPTGFEGPAV 227
VKL+ GP++FISG+K +C +G+KL +VV+S RGG G +P+ AP P P V
Sbjct: 98 VKLERSGPYFFISGSKSNCVEGEKLHIVVMSSRGGHTGGFFTGSSPSPAPSPALLGAPTV 157
Query: 226 APSPVSSATAL--QGGLVMLMGVLAM 155
AP+ SA++L Q G++ +G+LA+
Sbjct: 158 APASGGSASSLTRQVGVLGFVGLLAI 183
>pir||JC7196 phytocyanin-related protein Pn14 - common morning-glory
Length = 182
Score = 142 bits (358), Expect = 3e-33
Identities = 77/147 (52%), Positives = 95/147 (64%)
Frame = -3
Query: 586 PSSESDSLYKWAQRDRFQIGDHLVWKYDGGKDSVLEVSKEDYEKCNISSPIKEYNDGNTK 407
PSS SDSL WAQ+ RF GD LVWKYDG D+VLEVSK DY CNIS PI DG
Sbjct: 41 PSSPSDSLNNWAQKTRFLPGDSLVWKYDGKADAVLEVSKRDYVTCNISLPIGAMVDGTRS 100
Query: 406 VKLDHPGPFYFISGAKGHCEKGQKLVVVVLSPRGGRNTGTDVSPAPASAPVPTGFEGPAV 227
+ L+ GP+YFISGA+GHC+KGQK++VVVLS + R T +P+PA E PAV
Sbjct: 101 IVLERSGPYYFISGAEGHCQKGQKVIVVVLSEKHTRKFLTAAAPSPADE-----VEAPAV 155
Query: 226 APSPVSSATALQGGLVMLMGVLAMWVF 146
AP+ S A L+G L + G++ +F
Sbjct: 156 APT--SGAVGLKGSLGVGFGLVVGLLF 180
>dbj|BAA90481.1| phytocyanin-related protein [Ipomoea nil]
Length = 182
Score = 142 bits (358), Expect = 3e-33
Identities = 77/147 (52%), Positives = 95/147 (64%)
Frame = -3
Query: 586 PSSESDSLYKWAQRDRFQIGDHLVWKYDGGKDSVLEVSKEDYEKCNISSPIKEYNDGNTK 407
PSS SDSL WAQ+ RF GD LVWKYDG D+VLEVSK DY CNIS PI DG
Sbjct: 41 PSSPSDSLNNWAQKTRFLPGDSLVWKYDGKADAVLEVSKRDYVTCNISLPIGAMVDGTRS 100
Query: 406 VKLDHPGPFYFISGAKGHCEKGQKLVVVVLSPRGGRNTGTDVSPAPASAPVPTGFEGPAV 227
+ L+ GP+YFISGA+GHC+KGQK++VVVLS + R T +P+PA E PAV
Sbjct: 101 IVLERSGPYYFISGAEGHCQKGQKVIVVVLSEKHTRKFLTAAAPSPADE-----VEAPAV 155
Query: 226 APSPVSSATALQGGLVMLMGVLAMWVF 146
AP+ S A L+G L + G++ +F
Sbjct: 156 APT--SGAVGLKGSLGVGFGLVVGLLF 180
Database: nr
Posted date: Apr 1, 2003 2:05 AM
Number of letters in database: 448,689,247
Number of sequences in database: 1,393,205
Lambda K H
0.318 0.135 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 551,843,944
Number of Sequences: 1393205
Number of extensions: 13312091
Number of successful extensions: 61039
Number of sequences better than 10.0: 252
Number of HSP's better than 10.0 without gapping: 45697
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 59001
length of database: 448,689,247
effective HSP length: 117
effective length of database: 285,684,262
effective search space used: 22283372436
frameshift window, decay const: 50, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
