Nr search
BLASTX 2.2.2 [Dec-14-2001]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= KMC005377A_C01 KMC005377A_c01
(641 letters)
Database: nr
1,393,205 sequences; 448,689,247 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
emb|CAB54847.1| hydroperoxide lyase [Medicago sativa] 206 3e-52
emb|CAB54848.1| hydroperoxide lyase [Medicago sativa] 205 4e-52
emb|CAB54849.1| hydroperoxide lyase [Medicago sativa] 203 1e-51
pir||T51860 hydroperoxide lyase (EC 4.1.2.-) [validated] - Arabi... 197 1e-49
gb|AAL87304.1| putative hydroperoxide lyase HPOL [Arabidopsis th... 195 5e-49
>emb|CAB54847.1| hydroperoxide lyase [Medicago sativa]
Length = 480
Score = 206 bits (523), Expect = 3e-52
Identities = 95/117 (81%), Positives = 109/117 (92%)
Frame = -3
Query: 639 SVKEMDLVQSVVYETLRLNPPVPLQYARARKDFRLSSNDSAFQVKKGELLCGYQKLVMRD 460
S+KE++L+ SVVYETLR+NPPVPLQ+ RARKDF+LSS DSAF VKKGELLCG+QKLVMRD
Sbjct: 338 SLKELELINSVVYETLRMNPPVPLQFGRARKDFQLSSYDSAFNVKKGELLCGFQKLVMRD 397
Query: 459 PAVFDEPDSFKPDRFTSEKGAQLLNYLYWSNGPQTGTPSVSNKQCAGKDIVTLTASL 289
P VFDEP+ FKP+RFT EKGA+LLNYLYWSNGPQTG+P+VSNKQCAGKDIVT TA+L
Sbjct: 398 PVVFDEPEQFKPERFTKEKGAELLNYLYWSNGPQTGSPTVSNKQCAGKDIVTFTAAL 454
>emb|CAB54848.1| hydroperoxide lyase [Medicago sativa]
Length = 480
Score = 205 bits (522), Expect = 4e-52
Identities = 94/117 (80%), Positives = 109/117 (92%)
Frame = -3
Query: 639 SVKEMDLVQSVVYETLRLNPPVPLQYARARKDFRLSSNDSAFQVKKGELLCGYQKLVMRD 460
S+KE++L+ SVVYETLR+NPPVPLQ+ RARKDF+LSS DSAF VKKGELLCG+QKL+MRD
Sbjct: 338 SLKELELINSVVYETLRMNPPVPLQFGRARKDFQLSSYDSAFNVKKGELLCGFQKLIMRD 397
Query: 459 PAVFDEPDSFKPDRFTSEKGAQLLNYLYWSNGPQTGTPSVSNKQCAGKDIVTLTASL 289
P VFDEP+ FKP+RFT EKGA+LLNYLYWSNGPQTG+P+VSNKQCAGKDIVT TA+L
Sbjct: 398 PVVFDEPEQFKPERFTKEKGAELLNYLYWSNGPQTGSPTVSNKQCAGKDIVTFTAAL 454
>emb|CAB54849.1| hydroperoxide lyase [Medicago sativa]
Length = 480
Score = 203 bits (517), Expect = 1e-51
Identities = 94/117 (80%), Positives = 108/117 (91%)
Frame = -3
Query: 639 SVKEMDLVQSVVYETLRLNPPVPLQYARARKDFRLSSNDSAFQVKKGELLCGYQKLVMRD 460
S+KE++L+ SVVYETLR+NPPVPLQ+ RARKDF+LSS D AF VKKGELLCG+QKLVMRD
Sbjct: 338 SLKELELINSVVYETLRMNPPVPLQFGRARKDFQLSSYDFAFNVKKGELLCGFQKLVMRD 397
Query: 459 PAVFDEPDSFKPDRFTSEKGAQLLNYLYWSNGPQTGTPSVSNKQCAGKDIVTLTASL 289
P VFDEP+ FKP+RFT EKGA+LLNYLYWSNGPQTG+P+VSNKQCAGKDIVT TA+L
Sbjct: 398 PVVFDEPEQFKPERFTKEKGAELLNYLYWSNGPQTGSPTVSNKQCAGKDIVTFTAAL 454
>pir||T51860 hydroperoxide lyase (EC 4.1.2.-) [validated] - Arabidopsis thaliana
gi|3822403|gb|AAC69871.1| hydroperoxide lyase
[Arabidopsis thaliana]
Length = 492
Score = 197 bits (500), Expect = 1e-49
Identities = 92/117 (78%), Positives = 105/117 (89%)
Frame = -3
Query: 639 SVKEMDLVQSVVYETLRLNPPVPLQYARARKDFRLSSNDSAFQVKKGELLCGYQKLVMRD 460
+V EM+LV+SVVYETLR NPPVPLQ+ARARKDF++SS+D+ F+VKKGELLCGYQ LVMRD
Sbjct: 350 TVNEMELVKSVVYETLRFNPPVPLQFARARKDFQISSHDAVFEVKKGELLCGYQPLVMRD 409
Query: 459 PAVFDEPDSFKPDRFTSEKGAQLLNYLYWSNGPQTGTPSVSNKQCAGKDIVTLTASL 289
VFDEP+ FKPDR+ E G++LLNYLYWSNGPQTGTPS SNKQCA KDIVTLTASL
Sbjct: 410 ANVFDEPEEFKPDRYVGETGSELLNYLYWSNGPQTGTPSASNKQCAAKDIVTLTASL 466
>gb|AAL87304.1| putative hydroperoxide lyase HPOL [Arabidopsis thaliana]
Length = 338
Score = 195 bits (495), Expect = 5e-49
Identities = 91/117 (77%), Positives = 105/117 (88%)
Frame = -3
Query: 639 SVKEMDLVQSVVYETLRLNPPVPLQYARARKDFRLSSNDSAFQVKKGELLCGYQKLVMRD 460
+V EM+LV+SVVYETLR +PPVPLQ+ARARKDF++SS+D+ F+VKKGELLCGYQ LVMRD
Sbjct: 196 TVNEMELVKSVVYETLRFSPPVPLQFARARKDFQISSHDAVFEVKKGELLCGYQPLVMRD 255
Query: 459 PAVFDEPDSFKPDRFTSEKGAQLLNYLYWSNGPQTGTPSVSNKQCAGKDIVTLTASL 289
VFDEP+ FKPDR+ E G++LLNYLYWSNGPQTGTPS SNKQCA KDIVTLTASL
Sbjct: 256 ANVFDEPEEFKPDRYVGETGSELLNYLYWSNGPQTGTPSASNKQCAAKDIVTLTASL 312
Database: nr
Posted date: Apr 1, 2003 2:05 AM
Number of letters in database: 448,689,247
Number of sequences in database: 1,393,205
Lambda K H
0.318 0.135 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 590,086,403
Number of Sequences: 1393205
Number of extensions: 13557238
Number of successful extensions: 40469
Number of sequences better than 10.0: 1612
Number of HSP's better than 10.0 without gapping: 37711
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 39731
length of database: 448,689,247
effective HSP length: 118
effective length of database: 284,291,057
effective search space used: 27007650415
frameshift window, decay const: 50, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
