Nr search
BLASTX 2.2.2 [Dec-14-2001]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= KMC005376A_C01 KMC005376A_c01
(632 letters)
Database: nr
1,393,205 sequences; 448,689,247 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
ref|NP_179145.1| DNA-directed RNA polymerase II, third largest s... 330 1e-89
gb|AAM65319.1| DNA-directed RNA polymerase II, third largest sub... 327 1e-88
pir||S71177 DNA-directed RNA polymerase (EC 2.7.7.6) II 35.5K ch... 299 2e-80
ref|NP_179142.1| DNA-directed RNA polymerase II, third largest s... 299 2e-80
gb|AAH46047.1| Similar to polymerase (RNA) II (DNA directed) pol... 189 2e-47
>ref|NP_179145.1| DNA-directed RNA polymerase II, third largest subunit; protein id:
At2g15430.1, supported by cDNA: 3839., supported by
cDNA: gi_17381017, supported by cDNA: gi_20465882
[Arabidopsis thaliana] gi|11134646|sp|Q39211|RP3A_ARATH
DNA-directed RNA polymerase II 36 kDa polypeptide A (RNA
polymerase II subunit 3) gi|2129726|pir||S71176
DNA-directed RNA polymerase (EC 2.7.7.6) II 35.5K chain
A - Arabidopsis thaliana gi|514318|gb|AAB03741.1| RNA
polymerase II third largest subunit
gi|4544370|gb|AAD22281.1| DNA-directed RNA polymerase
II, third largest subunit [Arabidopsis thaliana]
gi|17381018|gb|AAL36321.1| putative DNA-directed RNA
polymerase II third largest subunit [Arabidopsis
thaliana] gi|20465883|gb|AAM20046.1| putative
DNA-directed RNA polymerase II [Arabidopsis thaliana]
Length = 319
Score = 330 bits (845), Expect = 1e-89
Identities = 165/207 (79%), Positives = 190/207 (91%), Gaps = 1/207 (0%)
Frame = +3
Query: 15 EGVSYARMPRVKIRELKDDMARFELRDTDASIANALRRVMISEVPTIAIDLVEIEVNSSV 194
+G +Y R P++KIRELKDD A+FELR+TD S+ANALRRVMISEVPT+AIDLVEIEVNSSV
Sbjct: 2 DGATYQRFPKIKIRELKDDYAKFELRETDVSMANALRRVMISEVPTVAIDLVEIEVNSSV 61
Query: 195 LNDEFIAHRLGLIPLTSERAMAMRFSRDCDASDGDGQCEFGSVEFHLRVKCMTDETLDVT 374
LNDEFIAHRLGLIPLTSERAM+MRFSRDCDA DGDGQCEF SVEF L KC+TD+TLDVT
Sbjct: 62 LNDEFIAHRLGLIPLTSERAMSMRFSRDCDACDGDGQCEFCSVEFRLSSKCVTDQTLDVT 121
Query: 375 SKDLYSSDHTVVPVDFSPDTS-SDSAVNKGIIIVKLRRGQELRLRAIARKGIGKDHAKWS 551
S+DLYS+D TV PVDF+ D+S SDS+ +KGIIIVKLRRGQEL+LRAIARKGIGKDHAKWS
Sbjct: 122 SRDLYSADPTVTPVDFTIDSSVSDSSEHKGIIIVKLRRGQELKLRAIARKGIGKDHAKWS 181
Query: 552 PAATVSFMYEPEIHINDDLMETLTLKE 632
PAATV+FMYEP+I IN+D+M+TL+ +E
Sbjct: 182 PAATVTFMYEPDIIINEDMMDTLSDEE 208
>gb|AAM65319.1| DNA-directed RNA polymerase II, third largest subunit [Arabidopsis
thaliana]
Length = 319
Score = 327 bits (837), Expect = 1e-88
Identities = 164/207 (79%), Positives = 189/207 (91%), Gaps = 1/207 (0%)
Frame = +3
Query: 15 EGVSYARMPRVKIRELKDDMARFELRDTDASIANALRRVMISEVPTIAIDLVEIEVNSSV 194
+G +Y R P++KIRELKDD A+FELR+TD S+ANALRRVMISEVPT+AIDLVEIEVNSSV
Sbjct: 2 DGATYQRFPKIKIRELKDDYAKFELRETDVSMANALRRVMISEVPTVAIDLVEIEVNSSV 61
Query: 195 LNDEFIAHRLGLIPLTSERAMAMRFSRDCDASDGDGQCEFGSVEFHLRVKCMTDETLDVT 374
LNDEFIAHRLGLI LTSERAM+MRFSRDCDA DGDGQCEF SVEF L KC+TD+TLDVT
Sbjct: 62 LNDEFIAHRLGLISLTSERAMSMRFSRDCDACDGDGQCEFCSVEFRLSSKCVTDQTLDVT 121
Query: 375 SKDLYSSDHTVVPVDFSPDTS-SDSAVNKGIIIVKLRRGQELRLRAIARKGIGKDHAKWS 551
S+DLYS+D TV PVDF+ D+S SDS+ +KGIIIVKLRRGQEL+LRAIARKGIGKDHAKWS
Sbjct: 122 SRDLYSADPTVTPVDFTIDSSVSDSSEHKGIIIVKLRRGQELKLRAIARKGIGKDHAKWS 181
Query: 552 PAATVSFMYEPEIHINDDLMETLTLKE 632
PAATV+FMYEP+I IN+D+M+TL+ +E
Sbjct: 182 PAATVTFMYEPDIIINEDMMDTLSDEE 208
>pir||S71177 DNA-directed RNA polymerase (EC 2.7.7.6) II 35.5K chain B -
Arabidopsis thaliana gi|514320|gb|AAB03740.1| RNA
polymerase II third largest subunit
Length = 319
Score = 299 bits (766), Expect = 2e-80
Identities = 151/207 (72%), Positives = 181/207 (86%), Gaps = 1/207 (0%)
Frame = +3
Query: 15 EGVSYARMPRVKIRELKDDMARFELRDTDASIANALRRVMISEVPTIAIDLVEIEVNSSV 194
+GV+Y R P VKIRELKDD A+FELR+TD S+ANALRRVMISEVPT+AI LV+IEVNSSV
Sbjct: 2 DGVTYQRFPTVKIRELKDDYAKFELRETDVSMANALRRVMISEVPTMAIHLVKIEVNSSV 61
Query: 195 LNDEFIAHRLGLIPLTSERAMAMRFSRDCDASDGDGQCEFGSVEFHLRVKCMTDETLDVT 374
LNDEFIA RL LIPLTSERAM+MRF +DC+ +GD CEF SVEF L KC+TD+TLDVT
Sbjct: 62 LNDEFIAQRLSLIPLTSERAMSMRFCQDCEDCNGDEHCEFCSVEFPLSAKCVTDQTLDVT 121
Query: 375 SKDLYSSDHTVVPVDFSPDTS-SDSAVNKGIIIVKLRRGQELRLRAIARKGIGKDHAKWS 551
S+DLYS+D TV PVDF+ ++S SDS+ +KGIII KLRRGQEL+L+A+ARKGIGKDHAKWS
Sbjct: 122 SRDLYSADPTVTPVDFTSNSSTSDSSEHKGIIIAKLRRGQELKLKALARKGIGKDHAKWS 181
Query: 552 PAATVSFMYEPEIHINDDLMETLTLKE 632
PAATV++MYEP+I IN+++M TLT +E
Sbjct: 182 PAATVTYMYEPDIIINEEMMNTLTDEE 208
>ref|NP_179142.1| DNA-directed RNA polymerase II, third largest subunit; protein id:
At2g15400.1 [Arabidopsis thaliana]
gi|12643753|sp|Q39212|RP3B_ARATH DNA-directed RNA
polymerase II 36 kDa polypeptide B (RNA polymerase II
subunit 3) gi|25288351|pir||E84528 hypothetical protein
At2g15400 [imported] - Arabidopsis thaliana
gi|4544373|gb|AAD22284.1| DNA-directed RNA polymerase
II, third largest subunit [Arabidopsis thaliana]
gi|28973621|gb|AAO64135.1| putative DNA-directed RNA
polymerase II, third largest subunit [Arabidopsis
thaliana]
Length = 319
Score = 299 bits (766), Expect = 2e-80
Identities = 151/207 (72%), Positives = 181/207 (86%), Gaps = 1/207 (0%)
Frame = +3
Query: 15 EGVSYARMPRVKIRELKDDMARFELRDTDASIANALRRVMISEVPTIAIDLVEIEVNSSV 194
+GV+Y R P VKIRELKDD A+FELR+TD S+ANALRRVMISEVPT+AI LV+IEVNSSV
Sbjct: 2 DGVTYQRFPTVKIRELKDDYAKFELRETDVSMANALRRVMISEVPTMAIHLVKIEVNSSV 61
Query: 195 LNDEFIAHRLGLIPLTSERAMAMRFSRDCDASDGDGQCEFGSVEFHLRVKCMTDETLDVT 374
LNDEFIA RL LIPLTSERAM+MRF +DC+ +GD CEF SVEF L KC+TD+TLDVT
Sbjct: 62 LNDEFIAQRLSLIPLTSERAMSMRFCQDCEDCNGDEHCEFCSVEFPLSAKCVTDQTLDVT 121
Query: 375 SKDLYSSDHTVVPVDFSPDTS-SDSAVNKGIIIVKLRRGQELRLRAIARKGIGKDHAKWS 551
S+DLYS+D TV PVDF+ ++S SDS+ +KGIII KLRRGQEL+L+A+ARKGIGKDHAKWS
Sbjct: 122 SRDLYSADPTVTPVDFTSNSSTSDSSEHKGIIIAKLRRGQELKLKALARKGIGKDHAKWS 181
Query: 552 PAATVSFMYEPEIHINDDLMETLTLKE 632
PAATV++MYEP+I IN+++M TLT +E
Sbjct: 182 PAATVTYMYEPDIIINEEMMNTLTDEE 208
>gb|AAH46047.1| Similar to polymerase (RNA) II (DNA directed) polypeptide C [Danio
rerio]
Length = 275
Score = 189 bits (481), Expect = 2e-47
Identities = 101/190 (53%), Positives = 137/190 (71%), Gaps = 3/190 (1%)
Frame = +3
Query: 27 YARMPRVKIRELKDDMARFELRDTDASIANALRRVMISEVPTIAIDLVEIEVNSSVLNDE 206
YA P VKI EL D+ +F + +TD ++AN++RRV +SEVPTIAID V+I+ NSSVL+DE
Sbjct: 3 YANQPTVKITELSDENVKFVIENTDLAVANSIRRVFMSEVPTIAIDWVQIDANSSVLHDE 62
Query: 207 FIAHRLGLIPLTSERAM-AMRFSRDCDASDGDGQCEFGSVEFHLRVKCMTDETLDVTSKD 383
F+AHR+GLIPLTS+ + M++SRDC D +C SVE L V+C D+T VTS+D
Sbjct: 63 FVAHRVGLIPLTSDDIVDKMQYSRDCTCDDFCPEC---SVELTLDVRCTEDQTRHVTSRD 119
Query: 384 LYSSDHTVVPV-DFSPDTSSDSAVNK-GIIIVKLRRGQELRLRAIARKGIGKDHAKWSPA 557
L S++ V+PV S D + V + I++VKLR+GQELRLRA A+KG GK+HAKW+P
Sbjct: 120 LLSNNPRVIPVTSRSRDNDPNDYVEQDDILLVKLRKGQELRLRAYAKKGFGKEHAKWNPT 179
Query: 558 ATVSFMYEPE 587
A V+F Y+P+
Sbjct: 180 AGVAFEYDPD 189
Database: nr
Posted date: Apr 1, 2003 2:05 AM
Number of letters in database: 448,689,247
Number of sequences in database: 1,393,205
Lambda K H
0.318 0.135 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 518,321,491
Number of Sequences: 1393205
Number of extensions: 10939972
Number of successful extensions: 42394
Number of sequences better than 10.0: 153
Number of HSP's better than 10.0 without gapping: 39996
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 42155
length of database: 448,689,247
effective HSP length: 118
effective length of database: 284,291,057
effective search space used: 26154777244
frameshift window, decay const: 50, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
