Nr search
BLASTX 2.2.2 [Dec-14-2001]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= KMC005374A_C02 KMC005374A_c02
(513 letters)
Database: nr
1,393,205 sequences; 448,689,247 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
gb|ZP_00048868.1| hypothetical protein [Magnetospirillum magneto... 32 5.6
ref|NP_077431.1| DNA polymerase-associated protein [Cercopitheci... 31 7.4
ref|NP_011487.1| Soluble Cell Wall protein; Scw11p [Saccharomyce... 31 9.6
>gb|ZP_00048868.1| hypothetical protein [Magnetospirillum magnetotacticum]
Length = 191
Score = 31.6 bits (70), Expect = 5.6
Identities = 17/41 (41%), Positives = 22/41 (53%)
Frame = -3
Query: 304 WNS*CWLAFPLFPLVCCVVSVRFLIDSVSRTSMFLEFYQVL 182
W+ C PL P C V V FLID VSR + + F Q++
Sbjct: 94 WDVICLFVQPLDPDRCRVHPVMFLIDDVSRLTDLVAFQQLI 134
>ref|NP_077431.1| DNA polymerase-associated protein [Cercopithecine herpesvirus 7]
gi|11036560|gb|AAG27189.1|AF275348_9 DNA
polymerase-associated protein [Cercopithecine
herpesvirus 7]
Length = 385
Score = 31.2 bits (69), Expect = 7.4
Identities = 15/47 (31%), Positives = 25/47 (52%)
Frame = +3
Query: 141 EQTYLII*LKFYLERTW*NSKNMLVLDTESIKNLTDTTQQTRGNKGK 281
EQ Y+ I +L+ TW K +++ T+ +L D QT+G+ K
Sbjct: 64 EQIYIPIPSSVFLDYTWTGPKMVILATTDGRSSLMDVFHQTKGDSPK 110
>ref|NP_011487.1| Soluble Cell Wall protein; Scw11p [Saccharomyces cerevisiae]
gi|1723809|sp|P53189|SCWB_YEAST Probable family 17
glucosidase SCW11 precursor (Soluble cell wall protein
11) gi|2132522|pir||S64030 probable membrane protein
YGL028c - yeast (Saccharomyces cerevisiae)
gi|1322500|emb|CAA96729.1| ORF YGL028c [Saccharomyces
cerevisiae]
Length = 542
Score = 30.8 bits (68), Expect = 9.6
Identities = 14/25 (56%), Positives = 19/25 (76%)
Frame = -2
Query: 509 TSAVPVSTLDPVTILQSTTSFRGDN 435
TS+ P STL P TI QST+SF+ ++
Sbjct: 99 TSSQPTSTLQPSTIPQSTSSFQAES 123
Database: nr
Posted date: Apr 1, 2003 2:05 AM
Number of letters in database: 448,689,247
Number of sequences in database: 1,393,205
Lambda K H
0.318 0.135 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 409,293,392
Number of Sequences: 1393205
Number of extensions: 8118399
Number of successful extensions: 19152
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 18696
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 19149
length of database: 448,689,247
effective HSP length: 114
effective length of database: 289,863,877
effective search space used: 16232377112
frameshift window, decay const: 50, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
