Nr search
BLASTX 2.2.2 [Dec-14-2001]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= KMC005372A_C01 KMC005372A_c01
(629 letters)
Database: nr
1,393,205 sequences; 448,689,247 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
gb|AAG50831.1|AC074395_5 unknown protein, 5' partial [Arabidopsi... 197 1e-49
ref|NP_566328.1| expressed protein; protein id: At3g08030.1, sup... 197 1e-49
ref|NP_181711.1| unknown protein; protein id: At2g41800.1, suppo... 194 1e-48
ref|NP_181712.1| unknown protein; protein id: At2g41810.1 [Arabi... 182 2e-45
pir||T10174 hypothetical protein - castor bean gi|1621268|emb|CA... 176 2e-43
>gb|AAG50831.1|AC074395_5 unknown protein, 5' partial [Arabidopsis thaliana]
Length = 323
Score = 197 bits (500), Expect = 1e-49
Identities = 95/140 (67%), Positives = 112/140 (79%)
Frame = -3
Query: 621 SPLPGWIIESLKAVKFIDAKHFNVPFGLGAVELVAGRESAIAQIIRTETNKVCNITFSVG 442
SPLPGWIIESLKAVKFID+K+FNVPFG A+ELVAG+ESAIAQ+IRT + ++F VG
Sbjct: 184 SPLPGWIIESLKAVKFIDSKYFNVPFGHAAIELVAGKESAIAQVIRTSPGQTYTLSFVVG 243
Query: 441 DAKNGCHGSMMVEAFAAKDTFKVPFKSVGKGKFVTVSFKFKAIAPRTRLTFYSSYYHTRT 262
DAKN CHGSMMVEAFAA+DT KVP SVG G T SFKFKA+ RTR+TF+S +YHT+
Sbjct: 244 DAKNDCHGSMMVEAFAARDTLKVPHTSVGGGHVKTASFKFKAVEARTRITFFSGFYHTKK 303
Query: 261 DDFGSLCGPVLDRVIVFPVA 202
D SLCGPV+D ++V VA
Sbjct: 304 TDTVSLCGPVIDEIVVSHVA 323
>ref|NP_566328.1| expressed protein; protein id: At3g08030.1, supported by cDNA:
27471., supported by cDNA: gi_18252184 [Arabidopsis
thaliana] gi|6648215|gb|AAF21213.1|AC013483_37 unknown
protein [Arabidopsis thaliana]
gi|18252185|gb|AAL61925.1| unknown protein [Arabidopsis
thaliana] gi|21555252|gb|AAM63815.1| unknown
[Arabidopsis thaliana] gi|23397197|gb|AAN31881.1|
unknown protein [Arabidopsis thaliana]
gi|27311877|gb|AAO00904.1| unknown protein [Arabidopsis
thaliana]
Length = 365
Score = 197 bits (500), Expect = 1e-49
Identities = 95/140 (67%), Positives = 112/140 (79%)
Frame = -3
Query: 621 SPLPGWIIESLKAVKFIDAKHFNVPFGLGAVELVAGRESAIAQIIRTETNKVCNITFSVG 442
SPLPGWIIESLKAVKFID+K+FNVPFG A+ELVAG+ESAIAQ+IRT + ++F VG
Sbjct: 226 SPLPGWIIESLKAVKFIDSKYFNVPFGHAAIELVAGKESAIAQVIRTSPGQTYTLSFVVG 285
Query: 441 DAKNGCHGSMMVEAFAAKDTFKVPFKSVGKGKFVTVSFKFKAIAPRTRLTFYSSYYHTRT 262
DAKN CHGSMMVEAFAA+DT KVP SVG G T SFKFKA+ RTR+TF+S +YHT+
Sbjct: 286 DAKNDCHGSMMVEAFAARDTLKVPHTSVGGGHVKTASFKFKAVEARTRITFFSGFYHTKK 345
Query: 261 DDFGSLCGPVLDRVIVFPVA 202
D SLCGPV+D ++V VA
Sbjct: 346 TDTVSLCGPVIDEIVVSHVA 365
>ref|NP_181711.1| unknown protein; protein id: At2g41800.1, supported by cDNA:
gi_17979519, supported by cDNA: gi_20453310 [Arabidopsis
thaliana] gi|25349285|pir||C84846 hypothetical protein
At2g41800 [imported] - Arabidopsis thaliana
gi|2335099|gb|AAC02768.1| unknown protein [Arabidopsis
thaliana] gi|17979520|gb|AAL50095.1| At2g41800/T11A7.10
[Arabidopsis thaliana] gi|20453311|gb|AAM19894.1|
At2g41800/T11A7.10 [Arabidopsis thaliana]
Length = 370
Score = 194 bits (492), Expect = 1e-48
Identities = 93/136 (68%), Positives = 110/136 (80%)
Frame = -3
Query: 621 SPLPGWIIESLKAVKFIDAKHFNVPFGLGAVELVAGRESAIAQIIRTETNKVCNITFSVG 442
SPLPGWI+ESLK VK+ID +HF VP+G GAVELVAGRESAIAQIIRT K ++F+VG
Sbjct: 231 SPLPGWIVESLKPVKYIDRRHFKVPYGQGAVELVAGRESAIAQIIRTIAGKAYMLSFAVG 290
Query: 441 DAKNGCHGSMMVEAFAAKDTFKVPFKSVGKGKFVTVSFKFKAIAPRTRLTFYSSYYHTRT 262
DA+NGCHGSMMVEAFA ++ FK+ F S GKG F T F+F A + RTRLTFYS++YHT+
Sbjct: 291 DAQNGCHGSMMVEAFAGREPFKLSFMSEGKGAFKTGHFRFVADSDRTRLTFYSAFYHTKL 350
Query: 261 DDFGSLCGPVLDRVIV 214
DFG LCGPVLD V+V
Sbjct: 351 HDFGHLCGPVLDSVVV 366
>ref|NP_181712.1| unknown protein; protein id: At2g41810.1 [Arabidopsis thaliana]
gi|25349286|pir||D84846 hypothetical protein At2g41810
[imported] - Arabidopsis thaliana
gi|2335098|gb|AAC02767.1| unknown protein [Arabidopsis
thaliana] gi|26450362|dbj|BAC42297.1| unknown protein
[Arabidopsis thaliana]
Length = 370
Score = 182 bits (463), Expect = 2e-45
Identities = 91/137 (66%), Positives = 104/137 (75%)
Frame = -3
Query: 621 SPLPGWIIESLKAVKFIDAKHFNVPFGLGAVELVAGRESAIAQIIRTETNKVCNITFSVG 442
SPLPGWI+ESLK VK+ID +HF VP GL A+ELVAGRESAIAQIIRT + K ++F VG
Sbjct: 231 SPLPGWIVESLKPVKYIDNRHFKVPSGLAAIELVAGRESAIAQIIRTVSGKNYILSFVVG 290
Query: 441 DAKNGCHGSMMVEAFAAKDTFKVPFKSVGKGKFVTVSFKFKAIAPRTRLTFYSSYYHTRT 262
DA NGCHGSMMVEAFA FKV F+S KG F F F+A + RTR+TFYS +YHT+
Sbjct: 291 DAHNGCHGSMMVEAFAGISAFKVTFESNDKGAFKVGRFAFRADSNRTRITFYSGFYHTKL 350
Query: 261 DDFGSLCGPVLDRVIVF 211
DFG LCGPVLD V VF
Sbjct: 351 HDFGHLCGPVLDNVSVF 367
>pir||T10174 hypothetical protein - castor bean gi|1621268|emb|CAB02653.1|
unknown [Ricinus communis]
Length = 364
Score = 176 bits (446), Expect = 2e-43
Identities = 85/139 (61%), Positives = 105/139 (75%)
Frame = -3
Query: 621 SPLPGWIIESLKAVKFIDAKHFNVPFGLGAVELVAGRESAIAQIIRTETNKVCNITFSVG 442
SPLPGW++ESLKAVK+ID HF+VP G A+ELVAG+ESAIAQ+ RT K ++F+VG
Sbjct: 223 SPLPGWMVESLKAVKYIDVDHFSVPQGRRAIELVAGKESAIAQVARTVIGKTYTLSFAVG 282
Query: 441 DAKNGCHGSMMVEAFAAKDTFKVPFKSVGKGKFVTVSFKFKAIAPRTRLTFYSSYYHTRT 262
DA N C GSM+VEAFA KDT KVP++S GKG F +F A+A RTR+ FYS++Y R+
Sbjct: 283 DASNSCEGSMVVEAFAGKDTLKVPYESKGKGGFKRAVLRFVAVANRTRIMFYSTFYTMRS 342
Query: 261 DDFGSLCGPVLDRVIVFPV 205
DDF SLCGPVLD V + V
Sbjct: 343 DDFSSLCGPVLDDVKLLSV 361
Database: nr
Posted date: Apr 1, 2003 2:05 AM
Number of letters in database: 448,689,247
Number of sequences in database: 1,393,205
Lambda K H
0.318 0.135 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 544,457,839
Number of Sequences: 1393205
Number of extensions: 11825376
Number of successful extensions: 40597
Number of sequences better than 10.0: 53
Number of HSP's better than 10.0 without gapping: 39129
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 40552
length of database: 448,689,247
effective HSP length: 118
effective length of database: 284,291,057
effective search space used: 25870486187
frameshift window, decay const: 50, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
