Nr search
BLASTX 2.2.2 [Dec-14-2001]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= KMC005369A_C02 KMC005369A_c02
(840 letters)
Database: nr
1,393,205 sequences; 448,689,247 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
emb|CAC34447.1| ZF-HD homeobox protein [Flaveria bidentis] 139 4e-32
ref|NP_194197.1| putative protein; protein id: At4g24660.1, supp... 137 2e-31
ref|NP_201344.1| hypothetical protein common family; protein id:... 119 7e-26
gb|AAD39591.1|AC007858_5 10A19I.6 [Oryza sativa] 114 2e-24
gb|AAM10791.1| hypothetical protein At2g02540/T822.16 [Arabidops... 104 1e-21
>emb|CAC34447.1| ZF-HD homeobox protein [Flaveria bidentis]
Length = 237
Score = 139 bits (351), Expect = 4e-32
Identities = 72/115 (62%), Positives = 86/115 (74%), Gaps = 7/115 (6%)
Frame = -2
Query: 809 GYLHHLVTPPLSQH-RPLALPPAGSGGFRREEEDMSNPSSSGGG------TKKRHRTRFT 651
GYLH + PP S H R LALP R + +++SNPSSSGGG +KKR RT+FT
Sbjct: 128 GYLH-MKPPPSSLHQRQLALPSTS----RDDLDEISNPSSSGGGGVGGSGSKKRFRTKFT 182
Query: 650 PEQKDKMLEFAERVGWRIQKHDEAAVEQFCEEACIKRHVLKVWMHNNKHTLGKKP 486
+QKD+ML F+E +GWRIQKHDEAAV+QFC E +KRHVLKVWMHNNKHT+GKKP
Sbjct: 183 QDQKDRMLAFSEALGWRIQKHDEAAVQQFCNETGVKRHVLKVWMHNNKHTIGKKP 237
>ref|NP_194197.1| putative protein; protein id: At4g24660.1, supported by cDNA:
gi_16612294 [Arabidopsis thaliana]
gi|7485966|pir||T05568 hypothetical protein F22K18.140 -
Arabidopsis thaliana gi|4220524|emb|CAA22997.1| putative
protein [Arabidopsis thaliana]
gi|7269316|emb|CAB79376.1| putative protein [Arabidopsis
thaliana] gi|16612295|gb|AAL27510.1|AF439841_1
AT4g24660/F22K18_140 [Arabidopsis thaliana]
gi|21928089|gb|AAM78073.1| AT4g24660/F22K18_140
[Arabidopsis thaliana]
Length = 220
Score = 137 bits (346), Expect = 2e-31
Identities = 71/114 (62%), Positives = 85/114 (74%)
Frame = -2
Query: 827 EPPPSAGYLHHLVTPPLSQHRPLALPPAGSGGFRREEEDMSNPSSSGGGTKKRHRTRFTP 648
+P GYLH +T P + +RP PA SG +EED SNPSSSGG T KR RT+FT
Sbjct: 118 QPHQPPGYLH--LTSPAAPYRP----PAASG----DEEDTSNPSSSGG-TTKRFRTKFTA 166
Query: 647 EQKDKMLEFAERVGWRIQKHDEAAVEQFCEEACIKRHVLKVWMHNNKHTLGKKP 486
EQK+KML FAER+GWRIQKHD+ AVEQFC E ++R VLK+WMHNNK++LGKKP
Sbjct: 167 EQKEKMLAFAERLGWRIQKHDDVAVEQFCAETGVRRQVLKIWMHNNKNSLGKKP 220
>ref|NP_201344.1| hypothetical protein common family; protein id: At5g65410.1
[Arabidopsis thaliana] gi|9759621|dbj|BAB11563.1|
contains similarity to unknown
protein~gene_id:MNA5.14~pir||T05568 [Arabidopsis
thaliana] gi|27311559|gb|AAO00745.1| putative protein
[Arabidopsis thaliana]
Length = 279
Score = 119 bits (297), Expect = 7e-26
Identities = 61/120 (50%), Positives = 78/120 (64%), Gaps = 7/120 (5%)
Frame = -2
Query: 824 PPPSAGYLHHLVT----PPLSQHRPL--ALPPAGSGGFRREEEDMSNPSS-SGGGTKKRH 666
PPP G+ PP SQ PL ALPP R E+ M S+ +GGG +KRH
Sbjct: 138 PPPPPGFYRLPAPVSYRPPPSQAPPLQLALPPPQR---ERSEDPMETSSAEAGGGIRKRH 194
Query: 665 RTRFTPEQKDKMLEFAERVGWRIQKHDEAAVEQFCEEACIKRHVLKVWMHNNKHTLGKKP 486
RT+FT EQK++ML AER+GWRIQ+ D+ +++FC+E + R VLKVW+HNNKHTLGK P
Sbjct: 195 RTKFTAEQKERMLALAERIGWRIQRQDDEVIQRFCQETGVPRQVLKVWLHNNKHTLGKSP 254
>gb|AAD39591.1|AC007858_5 10A19I.6 [Oryza sativa]
Length = 376
Score = 114 bits (285), Expect = 2e-24
Identities = 61/115 (53%), Positives = 73/115 (63%), Gaps = 5/115 (4%)
Frame = -2
Query: 824 PPPSAGYLHHLVTPPLSQHRPLALPPAGSGGFRRE--EEDMSNPSSSGG---GTKKRHRT 660
P P YLH PP H P+GSGG E E+ PSSS G +KR RT
Sbjct: 247 PHPQHPYLH----PPFPYHHT----PSGSGGTTTESSSEERGPPSSSAAAAQGRRKRFRT 298
Query: 659 RFTPEQKDKMLEFAERVGWRIQKHDEAAVEQFCEEACIKRHVLKVWMHNNKHTLG 495
+FTPEQK++ML FAERVGWR+QK DEA VEQFC + ++R V KVWMHNNK ++G
Sbjct: 299 KFTPEQKEQMLAFAERVGWRMQKQDEALVEQFCAQVGVRRQVFKVWMHNNKSSIG 353
>gb|AAM10791.1| hypothetical protein At2g02540/T822.16 [Arabidopsis thaliana]
Length = 310
Score = 104 bits (260), Expect = 1e-21
Identities = 59/135 (43%), Positives = 76/135 (55%), Gaps = 22/135 (16%)
Frame = -2
Query: 827 EPPPSAGYL---HHLVTPPLSQHR--PLALPPAGSGGFRREEEDMS-------------- 705
+PPP L H ++ PL Q P+ + AGS E ED+
Sbjct: 153 QPPPQQRKLMFHHKMIKSPLPQQMIMPIGVTTAGSNS---ESEDLMEEEGGGSLTFRQPP 209
Query: 704 ---NPSSSGGGTKKRHRTRFTPEQKDKMLEFAERVGWRIQKHDEAAVEQFCEEACIKRHV 534
+P S G KKR RT+FT EQK+KM+ FAERVGW+IQ+ +E+ V+Q C+E I+R V
Sbjct: 210 PPPSPYSYGHNQKKRFRTKFTQEQKEKMISFAERVGWKIQRQEESVVQQLCQEIGIRRRV 269
Query: 533 LKVWMHNNKHTLGKK 489
LKVWMHNNK L KK
Sbjct: 270 LKVWMHNNKQNLSKK 284
Database: nr
Posted date: Apr 1, 2003 2:05 AM
Number of letters in database: 448,689,247
Number of sequences in database: 1,393,205
Lambda K H
0.318 0.135 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 782,064,791
Number of Sequences: 1393205
Number of extensions: 19088681
Number of successful extensions: 68176
Number of sequences better than 10.0: 91
Number of HSP's better than 10.0 without gapping: 60034
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 67803
length of database: 448,689,247
effective HSP length: 122
effective length of database: 278,718,237
effective search space used: 43758763209
frameshift window, decay const: 50, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
