Nr search
BLASTX 2.2.2 [Dec-14-2001]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= KMC005368A_C01 KMC005368A_c01
(539 letters)
Database: nr
1,393,205 sequences; 448,689,247 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
ref|NP_174376.1| hypothetical protein; protein id: At1g30910.1 [... 194 6e-49
ref|NP_199285.1| putative protein; protein id: At5g44720.1, supp... 189 1e-47
gb|AAM65550.1| unknown [Arabidopsis thaliana] 189 2e-47
ref|ZP_00033794.1| hypothetical protein [Burkholderia fungorum] 100 9e-21
ref|NP_060417.1| molybdenum cofactor sulfurase [Homo sapiens] gi... 82 3e-15
>ref|NP_174376.1| hypothetical protein; protein id: At1g30910.1 [Arabidopsis
thaliana] gi|9755390|gb|AAF98197.1|AC000107_20 F17F8.22
[Arabidopsis thaliana] gi|26452771|dbj|BAC43466.1|
unknown protein [Arabidopsis thaliana]
Length = 318
Score = 194 bits (493), Expect = 6e-49
Identities = 92/156 (58%), Positives = 121/156 (76%)
Frame = +1
Query: 70 SPVTAASAAATEAAIPGAKVAEIFIYPIKSCSGISLPSAPLRATGLRWDREWMVVNEKGR 249
SP+ + S A+ AA +V+ +F+YPIKSC GISL A L TG RWDR W++VN KGR
Sbjct: 6 SPLLSPSPASEVAA----RVSSLFVYPIKSCRGISLSQAALTPTGFRWDRNWLIVNSKGR 61
Query: 250 GVTQRVEPELALVQVELPNEAFLEDWEPSQDSFMVSKAPGMEPLRVSLNKQHEVANGLSV 429
G+TQRVEP+L+L++VE+P AF EDWEP + S MV +APGM+ L+VSL K ++A+G+SV
Sbjct: 62 GLTQRVEPKLSLIEVEMPKHAFGEDWEPEKSSNMVVRAPGMDALKVSLAKPDKIADGVSV 121
Query: 430 WEWSGSAWDEGAEASQWFSDY*GKPSQLVRFDTASE 537
WEWSGSA DEG EASQWF+++ GKP +LVRF++A E
Sbjct: 122 WEWSGSALDEGEEASQWFTNFVGKPCRLVRFNSAYE 157
>ref|NP_199285.1| putative protein; protein id: At5g44720.1, supported by cDNA:
4029., supported by cDNA: gi_19423896, supported by
cDNA: gi_21280995 [Arabidopsis thaliana]
gi|2660677|gb|AAC79148.1| unknown protein [Arabidopsis
thaliana] gi|9758376|dbj|BAB08825.1| contains similarity
to unknown~gene_id:K23L20.6 [Arabidopsis thaliana]
gi|19423897|gb|AAL87349.1| unknown protein [Arabidopsis
thaliana] gi|21280996|gb|AAM45094.1| unknown protein
[Arabidopsis thaliana]
Length = 308
Score = 189 bits (481), Expect = 1e-47
Identities = 87/140 (62%), Positives = 108/140 (77%)
Frame = +1
Query: 118 GAKVAEIFIYPIKSCSGISLPSAPLRATGLRWDREWMVVNEKGRGVTQRVEPELALVQVE 297
G K+ + IYPIKSC GIS+P A + TG +WDR W+VVN KGR TQRVEP LALV+ E
Sbjct: 4 GLKIQSLVIYPIKSCRGISVPQATVTHTGFQWDRYWLVVNYKGRAYTQRVEPTLALVESE 63
Query: 298 LPNEAFLEDWEPSQDSFMVSKAPGMEPLRVSLNKQHEVANGLSVWEWSGSAWDEGAEASQ 477
LP EAFLEDWEP+ DS +V +APGM PL++ L + VA G+S+WEWSGSA+DEG EA++
Sbjct: 64 LPKEAFLEDWEPTNDSLLVIRAPGMSPLKIPLTRPSSVAEGVSMWEWSGSAFDEGEEAAK 123
Query: 478 WFSDY*GKPSQLVRFDTASE 537
WFSDY GK S+LVRF+ +E
Sbjct: 124 WFSDYLGKQSRLVRFNKDTE 143
>gb|AAM65550.1| unknown [Arabidopsis thaliana]
Length = 308
Score = 189 bits (479), Expect = 2e-47
Identities = 87/140 (62%), Positives = 107/140 (76%)
Frame = +1
Query: 118 GAKVAEIFIYPIKSCSGISLPSAPLRATGLRWDREWMVVNEKGRGVTQRVEPELALVQVE 297
G K+ + IYPIKSC GIS+P A + TG +WDR W+VVN KGR TQRVEP LALV+ E
Sbjct: 4 GLKIQSLVIYPIKSCRGISVPQATVTHTGFQWDRYWLVVNYKGRAYTQRVEPTLALVESE 63
Query: 298 LPNEAFLEDWEPSQDSFMVSKAPGMEPLRVSLNKQHEVANGLSVWEWSGSAWDEGAEASQ 477
LP EAFLEDWEP+ DS +V +APGM PL++ L + VA G+S+WEWSGSA+DEG EA++
Sbjct: 64 LPKEAFLEDWEPTNDSLLVIRAPGMSPLKIPLTRPSSVAEGVSMWEWSGSAFDEGEEAAK 123
Query: 478 WFSDY*GKPSQLVRFDTASE 537
WFSDY GK S+LVRF +E
Sbjct: 124 WFSDYLGKQSRLVRFKKDTE 143
>ref|ZP_00033794.1| hypothetical protein [Burkholderia fungorum]
Length = 291
Score = 100 bits (250), Expect = 9e-21
Identities = 57/142 (40%), Positives = 83/142 (58%), Gaps = 3/142 (2%)
Frame = +1
Query: 121 AKVAEIFIYPIKSCSGISLPSAPLRATGLRWDREWMVVNEKGRGVTQRVEPELALVQVEL 300
A ++E+F+YPIKSC+GI+L A L ATGL +DR WMV + G +TQR P +AL++VE+
Sbjct: 2 ATISELFVYPIKSCAGIALREARLLATGLEYDRCWMVTDPAGAMLTQRAYPRMALIKVEI 61
Query: 301 PNEAFLEDWEPSQDSFMVSKAPGMEPLRVSLNKQH-EVANGLSVWEWSGSAW--DEGAEA 471
+ +V +APGM LR LN + A + W +A+ D GA +
Sbjct: 62 GADD------------LVIRAPGMSELRTPLNAARLDAAPAVQTKVWRDAAYGLDTGAAS 109
Query: 472 SQWFSDY*GKPSQLVRFDTASE 537
+ WFS + G P++L+RFD E
Sbjct: 110 AAWFSAFLGVPARLLRFDPGHE 131
>ref|NP_060417.1| molybdenum cofactor sulfurase [Homo sapiens]
gi|7021017|dbj|BAA91353.1| unnamed protein product [Homo
sapiens]
Length = 888
Score = 82.4 bits (202), Expect = 3e-15
Identities = 54/161 (33%), Positives = 80/161 (49%), Gaps = 2/161 (1%)
Frame = +1
Query: 61 TAPSPVTAASAAATEAAIPGAKVAEIFIYPIKSCSGISLPSAPLRATGLRWDREWMVVNE 240
T P+P A A E A+ V +++YPIKSC+ + P+ GL +DR WMVVN
Sbjct: 563 TQPTPSEKA-AGVLEGALGPHVVTNLYLYPIKSCAAFEVTRWPVGNQGLLYDRSWMVVNH 621
Query: 241 KGRGVTQRVEPELALVQVELPNEAFLEDWEPSQDSFMVSKAPGMEPLRVSL--NKQHEVA 414
G ++Q+ EP L L+Q F++ + MV KA GMEP+ V L N +
Sbjct: 622 NGVCLSQKQEPRLCLIQ------PFID----LRQRIMVIKAKGMEPIEVPLEENSERTQI 671
Query: 415 NGLSVWEWSGSAWDEGAEASQWFSDY*GKPSQLVRFDTASE 537
V S +D G + S W S + G+P L++ + S+
Sbjct: 672 RQSRVCADRVSTYDCGEKISSWLSTFFGRPCNLIKQSSNSQ 712
Database: nr
Posted date: Apr 1, 2003 2:05 AM
Number of letters in database: 448,689,247
Number of sequences in database: 1,393,205
Lambda K H
0.318 0.135 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 521,812,849
Number of Sequences: 1393205
Number of extensions: 12673866
Number of successful extensions: 56270
Number of sequences better than 10.0: 182
Number of HSP's better than 10.0 without gapping: 46298
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 54824
length of database: 448,689,247
effective HSP length: 115
effective length of database: 288,470,672
effective search space used: 18462123008
frameshift window, decay const: 50, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
