Nr search
BLASTX 2.2.2 [Dec-14-2001]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= KMC005366A_C01 KMC005366A_c01
(457 letters)
Database: nr
1,393,205 sequences; 448,689,247 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
emb|CAD54431.1| quinone-oxidoreductase homologue [Spinacia olera... 103 4e-46
dbj|BAA83082.1| LEDI-4 protein [Lithospermum erythrorhizon] 97 6e-40
ref|NP_193037.1| putative protein; protein id: At4g13010.1, supp... 110 5e-24
gb|AAG53944.1| quinone-oxidoreductase QR1 [Triphysaria versicolor] 105 3e-22
ref|NP_469965.1| similar to oxidoreductase [Listeria innocua] gi... 70 4e-20
>emb|CAD54431.1| quinone-oxidoreductase homologue [Spinacia oleracea]
Length = 329
Score = 103 bits (257), Expect(2) = 4e-46
Identities = 47/67 (70%), Positives = 56/67 (83%)
Frame = +2
Query: 14 KMMHAVQYDAYGGGAAGLKHVEVPVPSPKKNEVLLRLEAASINPVDWKIQKGVLRPLFLP 193
K+MHA+QY YGGG LKHVEV VP PK +E+LL++EAA++NP+DWKIQKGVLRPL LP
Sbjct: 4 KLMHAIQYSGYGGGTDALKHVEVAVPDPKSDELLLKIEAATLNPIDWKIQKGVLRPL-LP 62
Query: 194 RSFPHIP 214
R FP IP
Sbjct: 63 RKFPTIP 69
Score = 102 bits (254), Expect(2) = 4e-46
Identities = 53/85 (62%), Positives = 59/85 (69%)
Frame = +3
Query: 201 FPTYLGTDVAGEVAEVGPQVKDFKVGDKVIAKLSTQYGGGLAEFAVASETLTAARPSQVS 380
FPT GTDVAGEV + G V FK GDKV+A LS GG LAE+AVA E LT ARP +VS
Sbjct: 65 FPTIPGTDVAGEVVQAGSAVNRFKTGDKVVAVLSHATGGALAEYAVAKENLTVARPPEVS 124
Query: 381 PAEAAGLPIAGLTARDALTQIAGVK 455
AE A LP+A LTA ALTQ A +K
Sbjct: 125 AAEGAALPVAALTAHQALTQFANIK 149
>dbj|BAA83082.1| LEDI-4 protein [Lithospermum erythrorhizon]
Length = 288
Score = 97.1 bits (240), Expect(2) = 6e-40
Identities = 43/67 (64%), Positives = 55/67 (81%)
Frame = +2
Query: 14 KMMHAVQYDAYGGGAAGLKHVEVPVPSPKKNEVLLRLEAASINPVDWKIQKGVLRPLFLP 193
K+M AV Y+ YGGGAA LKHVE+P+P P K+EVL++ EA S+NP+D KIQ+G+ RP+ LP
Sbjct: 4 KLMRAVWYEGYGGGAAKLKHVEIPIPKPSKDEVLIKFEAVSLNPIDCKIQEGMARPI-LP 62
Query: 194 RSFPHIP 214
R FPHIP
Sbjct: 63 RKFPHIP 69
Score = 88.2 bits (217), Expect(2) = 6e-40
Identities = 45/85 (52%), Positives = 54/85 (62%)
Frame = +3
Query: 201 FPTYLGTDVAGEVAEVGPQVKDFKVGDKVIAKLSTQYGGGLAEFAVASETLTAARPSQVS 380
FP G DV GE+ E G K FK GDKV+A +S GGGLAE+ VA E + RP +VS
Sbjct: 65 FPHIPGYDVTGEIVETGSGAKKFKAGDKVVAIISHTGGGGLAEYGVAKENMIVVRPPEVS 124
Query: 381 PAEAAGLPIAGLTARDALTQIAGVK 455
PA+AA L + LTA ALTQ G+K
Sbjct: 125 PAQAAPLHVTALTAHQALTQAIGLK 149
>ref|NP_193037.1| putative protein; protein id: At4g13010.1, supported by cDNA:
6276., supported by cDNA: gi_15028000, supported by
cDNA: gi_15724255, supported by cDNA: gi_15912236
[Arabidopsis thaliana] gi|7430959|pir||T10203
hypothetical protein F25G13.100 - Arabidopsis thaliana
gi|5123942|emb|CAB45500.1| putative protein [Arabidopsis
thaliana] gi|7268003|emb|CAB78343.1| putative protein
[Arabidopsis thaliana] gi|15028001|gb|AAK76531.1|
unknown protein [Arabidopsis thaliana]
gi|15724256|gb|AAL06521.1|AF412068_1
AT4g13010/F25G13_100 [Arabidopsis thaliana]
gi|15912237|gb|AAL08252.1| AT4g13010/F25G13_100
[Arabidopsis thaliana] gi|21436057|gb|AAM51229.1|
unknown protein [Arabidopsis thaliana]
Length = 329
Score = 110 bits (276), Expect = 5e-24
Identities = 50/67 (74%), Positives = 61/67 (90%)
Frame = +2
Query: 14 KMMHAVQYDAYGGGAAGLKHVEVPVPSPKKNEVLLRLEAASINPVDWKIQKGVLRPLFLP 193
K+MHA+QY++YGGGAAGL+HV+VPVP+PK NEV L+LEA S+NPVDWKIQKG++RP FLP
Sbjct: 4 KLMHALQYNSYGGGAAGLEHVQVPVPTPKSNEVCLKLEATSLNPVDWKIQKGMIRP-FLP 62
Query: 194 RSFPHIP 214
R FP IP
Sbjct: 63 RKFPCIP 69
Score = 104 bits (260), Expect = 4e-22
Identities = 57/90 (63%), Positives = 63/90 (69%)
Frame = +3
Query: 186 FYLEAFPTYLGTDVAGEVAEVGPQVKDFKVGDKVIAKLSTQYGGGLAEFAVASETLTAAR 365
F FP TDVAGEV EVG VK+FK GDKV+A LS GGGLAEFAVA+E LT R
Sbjct: 60 FLPRKFPCIPATDVAGEVVEVGSGVKNFKAGDKVVAVLSHLGGGGLAEFAVATEKLTVKR 119
Query: 366 PSQVSPAEAAGLPIAGLTARDALTQIAGVK 455
P +V AEAA LP+AGLTA ALT AG+K
Sbjct: 120 PQEVGAAEAAALPVAGLTALQALTNPAGLK 149
>gb|AAG53944.1| quinone-oxidoreductase QR1 [Triphysaria versicolor]
Length = 329
Score = 105 bits (261), Expect = 3e-22
Identities = 48/67 (71%), Positives = 57/67 (84%)
Frame = +2
Query: 14 KMMHAVQYDAYGGGAAGLKHVEVPVPSPKKNEVLLRLEAASINPVDWKIQKGVLRPLFLP 193
K+M AVQYD YGGGAAGLKHVEVP+PSP K EVL++LEA S+N +DWK+Q G++RP FLP
Sbjct: 4 KLMRAVQYDGYGGGAAGLKHVEVPIPSPGKGEVLIKLEAISLNQLDWKLQNGMVRP-FLP 62
Query: 194 RSFPHIP 214
R FP IP
Sbjct: 63 RKFPFIP 69
Score = 99.0 bits (245), Expect = 2e-20
Identities = 53/89 (59%), Positives = 62/89 (69%)
Frame = +3
Query: 186 FYLEAFPTYLGTDVAGEVAEVGPQVKDFKVGDKVIAKLSTQYGGGLAEFAVASETLTAAR 365
F FP TDVAGEV +G VK+FK GDKV+A L + GGGLAE+ VASE LT R
Sbjct: 60 FLPRKFPFIPATDVAGEVVRIGQDVKNFKPGDKVVAMLGSFGGGGLAEYGVASEKLTVHR 119
Query: 366 PSQVSPAEAAGLPIAGLTARDALTQIAGV 452
P +VS AE++GLPIAGLTA ALTQ G+
Sbjct: 120 PPEVSAAESSGLPIAGLTAHMALTQHIGL 148
>ref|NP_469965.1| similar to oxidoreductase [Listeria innocua]
gi|25282950|pir||AF1510 oxidoreductase homolog lin0622
[imported] - Listeria innocua (strain Clip11262)
gi|16413062|emb|CAC95854.1| similar to oxidoreductase
[Listeria innocua]
Length = 313
Score = 69.7 bits (169), Expect(2) = 4e-20
Identities = 38/78 (48%), Positives = 48/78 (60%)
Frame = +3
Query: 201 FPTYLGTDVAGEVAEVGPQVKDFKVGDKVIAKLSTQYGGGLAEFAVASETLTAARPSQVS 380
FP LG DVAG ++EVG V D+KVGD+V A+ T G AE+ + L A P +S
Sbjct: 59 FPIILGWDVAGVISEVGEGVTDWKVGDEVFARPETTRFGTYAEYTAVDDHLLAPLPEGIS 118
Query: 381 PAEAAGLPIAGLTARDAL 434
EAA +P+AGLTA AL
Sbjct: 119 FEEAASIPLAGLTAWQAL 136
Score = 48.9 bits (115), Expect(2) = 4e-20
Identities = 24/55 (43%), Positives = 36/55 (64%)
Frame = +2
Query: 20 MHAVQYDAYGGGAAGLKHVEVPVPSPKKNEVLLRLEAASINPVDWKIQKGVLRPL 184
M AV + YGG LK EV +P KN+V+++ A SINP+DWK+++G L+ +
Sbjct: 1 MKAVVIENYGGKEE-LKEKEVAMPKAGKNQVIVKEVATSINPIDWKLREGYLKQM 54
Database: nr
Posted date: Apr 1, 2003 2:05 AM
Number of letters in database: 448,689,247
Number of sequences in database: 1,393,205
Lambda K H
0.318 0.135 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 402,316,842
Number of Sequences: 1393205
Number of extensions: 8603827
Number of successful extensions: 28509
Number of sequences better than 10.0: 906
Number of HSP's better than 10.0 without gapping: 26941
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 28315
length of database: 448,689,247
effective HSP length: 112
effective length of database: 292,650,287
effective search space used: 11413361193
frameshift window, decay const: 50, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
