Nr search
BLASTX 2.2.2 [Dec-14-2001]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= KMC005365A_C01 KMC005365A_c01
(1032 letters)
Database: nr
1,393,205 sequences; 448,689,247 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
gb|AAF75750.1|AF261140_1 unknown [Lycopersicon esculentum] 375 e-103
ref|NP_566055.1| expressed protein; protein id: At2g45740.1, sup... 372 e-102
ref|NP_563636.1| expressed protein; protein id: At1g01820.1, sup... 369 e-101
pir||T02473 hypothetical protein At2g45740 [imported] - Arabidop... 363 2e-99
gb|AAO22773.1| unknown protein [Arabidopsis thaliana] gi|2839405... 360 2e-98
>gb|AAF75750.1|AF261140_1 unknown [Lycopersicon esculentum]
Length = 235
Score = 375 bits (963), Expect = e-103
Identities = 187/222 (84%), Positives = 206/222 (92%)
Frame = -2
Query: 950 SVLYLNKAEARDKICRAIQYGSKFLSNGEPGTAQNVDKSTSLARKVFRLFKFVNDLHGLI 771
+VLYLNKAEARDKICRAIQYG+KFLS+G+PGTAQNVDKSTSLARK+FRLFKF+NDLH LI
Sbjct: 14 AVLYLNKAEARDKICRAIQYGAKFLSDGQPGTAQNVDKSTSLARKLFRLFKFINDLHALI 73
Query: 770 SPTPQGTPLPLILLGKSKNALLSTFLFLDQFVWLGRTGIIENKERTELLGRISLFCWLGS 591
SP GTPLPLILLGKSKNALLST+LFLDQFVWLGR+GI +NKE+TEL+GRIS F W+GS
Sbjct: 74 SPNAPGTPLPLILLGKSKNALLSTYLFLDQFVWLGRSGIYKNKEQTELIGRISFFSWMGS 133
Query: 590 SACTTLVELGELGRLSTSMKKLEKELKNTNKYDNEQYRAKLQKSNERTLALVKASIDIVV 411
S CT LVE+GELGRLS+SMKKLEKELKNT+KY NEQYR+KLQKSNER+LAL+KA DIVV
Sbjct: 134 SICTALVEIGELGRLSSSMKKLEKELKNTDKYMNEQYRSKLQKSNERSLALIKAGTDIVV 193
Query: 410 AVGLLQLAPKKVTPRVTGAFGFVSSLISCYQLLPAPVKSKTS 285
AVGLLQLAPKKVTPRVTGAFGFVSSLISCYQLLP+ K K S
Sbjct: 194 AVGLLQLAPKKVTPRVTGAFGFVSSLISCYQLLPSSPKDKAS 235
>ref|NP_566055.1| expressed protein; protein id: At2g45740.1, supported by cDNA:
12250., supported by cDNA: gi_15450879 [Arabidopsis
thaliana] gi|15450880|gb|AAK96711.1| Unknown protein
[Arabidopsis thaliana] gi|20197204|gb|AAC28551.2|
expressed protein [Arabidopsis thaliana]
gi|21537163|gb|AAM61504.1| unknown [Arabidopsis
thaliana]
Length = 236
Score = 372 bits (955), Expect = e-102
Identities = 181/220 (82%), Positives = 204/220 (92%)
Frame = -2
Query: 947 VLYLNKAEARDKICRAIQYGSKFLSNGEPGTAQNVDKSTSLARKVFRLFKFVNDLHGLIS 768
V+YLNKAEARDK+CRAIQYGSKFLS G+PGTAQNVDKSTSLARKVFRLFKFVNDLHGLIS
Sbjct: 16 VMYLNKAEARDKLCRAIQYGSKFLSGGQPGTAQNVDKSTSLARKVFRLFKFVNDLHGLIS 75
Query: 767 PTPQGTPLPLILLGKSKNALLSTFLFLDQFVWLGRTGIIENKERTELLGRISLFCWLGSS 588
P P+GTPLPL+LLGKSKNALLSTFLFLDQ VWLGR+GI +NKER ELLGRISLFCW+GSS
Sbjct: 76 PVPKGTPLPLVLLGKSKNALLSTFLFLDQIVWLGRSGIYKNKERAELLGRISLFCWMGSS 135
Query: 587 ACTTLVELGELGRLSTSMKKLEKELKNTNKYDNEQYRAKLQKSNERTLALVKASIDIVVA 408
CTTLVE+GE+GRLS+SMKK+EK LKN NKY +E YRAKL+KSNER+LAL+K+++DIVVA
Sbjct: 136 VCTTLVEVGEMGRLSSSMKKIEKGLKNGNKYQDEDYRAKLKKSNERSLALIKSAMDIVVA 195
Query: 407 VGLLQLAPKKVTPRVTGAFGFVSSLISCYQLLPAPVKSKT 288
GLLQLAP K+TPRVTGAFGF++S+ISCYQLLP K KT
Sbjct: 196 AGLLQLAPTKITPRVTGAFGFITSIISCYQLLPTRPKIKT 235
>ref|NP_563636.1| expressed protein; protein id: At1g01820.1, supported by cDNA:
28475., supported by cDNA: gi_12083289, supported by
cDNA: gi_17381254, supported by cDNA: gi_20453366
[Arabidopsis thaliana] gi|25511713|pir||A86150 T1N6.24
protein - Arabidopsis thaliana
gi|8671852|gb|AAF78415.1|AC009273_21 Contains similarity
to an unknown protein F4I18.28 gi|7486466 from
Arabidopsis thaliana BAC F4I18 gb|AC004665. ESTs
gb|F14309, gb|AI998750, gb|995247, gb|T14224 and
gb|AI995247 come from this gene
gi|12083290|gb|AAG48804.1|AF332441_1 unknown protein
[Arabidopsis thaliana] gi|17381255|gb|AAL36046.1|
At1g01820/T1N6_18 [Arabidopsis thaliana]
gi|20453367|gb|AAM19922.1| At1g01820/T1N6_18
[Arabidopsis thaliana] gi|21555588|gb|AAM63892.1|
unknown [Arabidopsis thaliana]
Length = 235
Score = 369 bits (948), Expect = e-101
Identities = 181/219 (82%), Positives = 204/219 (92%)
Frame = -2
Query: 947 VLYLNKAEARDKICRAIQYGSKFLSNGEPGTAQNVDKSTSLARKVFRLFKFVNDLHGLIS 768
V+YLNKAEARDKICRAIQYGSKFLS+G+PGTAQNVDK+TSLARKVFRLFKFVNDLH LIS
Sbjct: 15 VVYLNKAEARDKICRAIQYGSKFLSDGQPGTAQNVDKNTSLARKVFRLFKFVNDLHALIS 74
Query: 767 PTPQGTPLPLILLGKSKNALLSTFLFLDQFVWLGRTGIIENKERTELLGRISLFCWLGSS 588
P P+GTPLPL+LLGKSKNALLSTFLFLDQ VWLGRTGI ++KER E+LGRISLFCW+GSS
Sbjct: 75 PVPKGTPLPLVLLGKSKNALLSTFLFLDQIVWLGRTGIYKDKERAEILGRISLFCWMGSS 134
Query: 587 ACTTLVELGELGRLSTSMKKLEKELKNTNKYDNEQYRAKLQKSNERTLALVKASIDIVVA 408
CT+LVE+GELGRLS S+KKLEKE+ N +K+ NEQYRAK++KSNER+LAL+KA +D+VVA
Sbjct: 135 VCTSLVEVGELGRLSASIKKLEKEIGNKDKHQNEQYRAKVEKSNERSLALIKAGMDVVVA 194
Query: 407 VGLLQLAPKKVTPRVTGAFGFVSSLISCYQLLPAPVKSK 291
GLLQLAPKKVTPRVTGAFGF SSLISCYQLLP+ KSK
Sbjct: 195 FGLLQLAPKKVTPRVTGAFGFASSLISCYQLLPSHPKSK 233
>pir||T02473 hypothetical protein At2g45740 [imported] - Arabidopsis thaliana
Length = 239
Score = 363 bits (932), Expect = 2e-99
Identities = 175/211 (82%), Positives = 199/211 (93%)
Frame = -2
Query: 947 VLYLNKAEARDKICRAIQYGSKFLSNGEPGTAQNVDKSTSLARKVFRLFKFVNDLHGLIS 768
V+YLNKAEARDK+CRAIQYGSKFLS G+PGTAQNVDKSTSLARKVFRLFKFVNDLHGLIS
Sbjct: 16 VMYLNKAEARDKLCRAIQYGSKFLSGGQPGTAQNVDKSTSLARKVFRLFKFVNDLHGLIS 75
Query: 767 PTPQGTPLPLILLGKSKNALLSTFLFLDQFVWLGRTGIIENKERTELLGRISLFCWLGSS 588
P P+GTPLPL+LLGKSKNALLSTFLFLDQ VWLGR+GI +NKER ELLGRISLFCW+GSS
Sbjct: 76 PVPKGTPLPLVLLGKSKNALLSTFLFLDQIVWLGRSGIYKNKERAELLGRISLFCWMGSS 135
Query: 587 ACTTLVELGELGRLSTSMKKLEKELKNTNKYDNEQYRAKLQKSNERTLALVKASIDIVVA 408
CTTLVE+GE+GRLS+SMKK+EK LKN NKY +E YRAKL+KSNER+LAL+K+++DIVVA
Sbjct: 136 VCTTLVEVGEMGRLSSSMKKIEKGLKNGNKYQDEDYRAKLKKSNERSLALIKSAMDIVVA 195
Query: 407 VGLLQLAPKKVTPRVTGAFGFVSSLISCYQL 315
GLLQLAP K+TPRVTGAFGF++S+ISCYQ+
Sbjct: 196 AGLLQLAPTKITPRVTGAFGFITSIISCYQV 226
>gb|AAO22773.1| unknown protein [Arabidopsis thaliana] gi|28394051|gb|AAO42433.1|
unknown protein [Arabidopsis thaliana]
Length = 231
Score = 360 bits (925), Expect = 2e-98
Identities = 180/220 (81%), Positives = 201/220 (90%)
Frame = -2
Query: 947 VLYLNKAEARDKICRAIQYGSKFLSNGEPGTAQNVDKSTSLARKVFRLFKFVNDLHGLIS 768
VLYLNKAEARDKICRAIQYGSKFLS G+PGTAQ VDK+TSLARKVFRLFKFVND HGLIS
Sbjct: 15 VLYLNKAEARDKICRAIQYGSKFLSGGQPGTAQTVDKNTSLARKVFRLFKFVNDFHGLIS 74
Query: 767 PTPQGTPLPLILLGKSKNALLSTFLFLDQFVWLGRTGIIENKERTELLGRISLFCWLGSS 588
P P+GTPLPL+LLGKSKNALLSTFLFLDQ VWLGR+GI +NKERTELLGRISLFCWLGSS
Sbjct: 75 PVPKGTPLPLVLLGKSKNALLSTFLFLDQIVWLGRSGIYKNKERTELLGRISLFCWLGSS 134
Query: 587 ACTTLVELGELGRLSTSMKKLEKELKNTNKYDNEQYRAKLQKSNERTLALVKASIDIVVA 408
CT+ VE+GELGRLS+SMKK+EKEL K D+E YRAKLQKSN+RTLAL+K+S+DI+VA
Sbjct: 135 VCTSAVEIGELGRLSSSMKKMEKEL----KADDELYRAKLQKSNDRTLALIKSSMDIIVA 190
Query: 407 VGLLQLAPKKVTPRVTGAFGFVSSLISCYQLLPAPVKSKT 288
+GLLQLAPK ++PRVTGAFGF +SLISCYQLLP+ K KT
Sbjct: 191 IGLLQLAPKTISPRVTGAFGFTTSLISCYQLLPSRPKLKT 230
Database: nr
Posted date: Apr 1, 2003 2:05 AM
Number of letters in database: 448,689,247
Number of sequences in database: 1,393,205
Lambda K H
0.318 0.135 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 877,474,586
Number of Sequences: 1393205
Number of extensions: 19595625
Number of successful extensions: 55025
Number of sequences better than 10.0: 32
Number of HSP's better than 10.0 without gapping: 52638
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 54998
length of database: 448,689,247
effective HSP length: 124
effective length of database: 275,931,827
effective search space used: 60429070113
frameshift window, decay const: 50, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
