Nr search
BLASTX 2.2.2 [Dec-14-2001]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= KMC005363A_C01 KMC005363A_c01
(438 letters)
Database: nr
1,393,205 sequences; 448,689,247 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
gb|AAM66952.1| unknown [Arabidopsis thaliana] 40 0.007
ref|NP_566500.1| Expressed protein; protein id: At3g15110.1, sup... 40 0.007
dbj|BAB02565.1| gene_id:F4B12.2~unknown protein [Arabidopsis tha... 40 0.007
gb|AAB37238.1| LW-amid and MW-amid-containing preprohormone [Hyd... 30 5.2
ref|NP_053027.1| EpsG [Lactococcus lactis subsp. cremoris] gi|20... 30 6.8
>gb|AAM66952.1| unknown [Arabidopsis thaliana]
Length = 266
Score = 40.0 bits (92), Expect = 0.007
Identities = 20/37 (54%), Positives = 23/37 (62%)
Frame = -1
Query: 417 LATFIFGLNSLGLFLYSGPLAIQSTSGWVN*KGN*KP 307
LATF+FGLN+ GL LYSG LA S N K +P
Sbjct: 208 LATFVFGLNAFGLLLYSGQLAFNEDSAEENMKATTQP 244
>ref|NP_566500.1| Expressed protein; protein id: At3g15110.1, supported by cDNA:
8691. [Arabidopsis thaliana]
Length = 266
Score = 40.0 bits (92), Expect = 0.007
Identities = 20/37 (54%), Positives = 23/37 (62%)
Frame = -1
Query: 417 LATFIFGLNSLGLFLYSGPLAIQSTSGWVN*KGN*KP 307
LATF+FGLN+ GL LYSG LA S N K +P
Sbjct: 208 LATFVFGLNAFGLLLYSGQLAFNEDSAEENMKATTQP 244
>dbj|BAB02565.1| gene_id:F4B12.2~unknown protein [Arabidopsis thaliana]
Length = 135
Score = 40.0 bits (92), Expect = 0.007
Identities = 20/37 (54%), Positives = 23/37 (62%)
Frame = -1
Query: 417 LATFIFGLNSLGLFLYSGPLAIQSTSGWVN*KGN*KP 307
LATF+FGLN+ GL LYSG LA S N K +P
Sbjct: 77 LATFVFGLNAFGLLLYSGQLAFNEDSAEENMKATTQP 113
>gb|AAB37238.1| LW-amid and MW-amid-containing preprohormone [Hydra magnipapillata]
Length = 403
Score = 30.4 bits (67), Expect = 5.2
Identities = 15/32 (46%), Positives = 21/32 (64%)
Frame = -2
Query: 353 SNPLPGGSTEKETESQSVDQSSLSNSLDESPA 258
SNP PG +KE E ++VD+ +SL+E PA
Sbjct: 300 SNPYPGLWGKKEEELENVDKEIEEDSLEEFPA 331
>ref|NP_053027.1| EpsG [Lactococcus lactis subsp. cremoris] gi|2072444|gb|AAC45234.1|
EpsG [Lactococcus lactis subsp. cremoris]
Length = 316
Score = 30.0 bits (66), Expect = 6.8
Identities = 15/53 (28%), Positives = 30/53 (56%), Gaps = 3/53 (5%)
Frame = +3
Query: 33 IQH*GRVTALKNTNHLQVTTLFAKVKDYEEMYHLYKQIRLADPF---LHFKFT 182
+QH G +T+ + N L + +K YE+++H Y + ++ D + L +KF+
Sbjct: 202 VQHKGTITSDNSLNILDI------IKSYEDVFHYYNEKQINDLYFDELEYKFS 248
Database: nr
Posted date: Apr 1, 2003 2:05 AM
Number of letters in database: 448,689,247
Number of sequences in database: 1,393,205
Lambda K H
0.318 0.135 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 387,527,976
Number of Sequences: 1393205
Number of extensions: 8228506
Number of successful extensions: 18004
Number of sequences better than 10.0: 14
Number of HSP's better than 10.0 without gapping: 17581
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 18003
length of database: 448,689,247
effective HSP length: 121
effective length of database: 280,111,442
effective search space used: 6722674608
frameshift window, decay const: 50, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
