Nr search
BLASTX 2.2.2 [Dec-14-2001]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= KMC005361A_C01 KMC005361A_c01
(463 letters)
Database: nr
1,393,205 sequences; 448,689,247 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
gb|AAL65124.1| GT-2 factor [Glycine max] 74 1e-16
dbj|BAB41080.1| DNA-binding protein DF1 [Pisum sativum] 69 3e-11
ref|NP_177814.1| GT-like trihelix DNA-binding protein, putative;... 59 4e-10
gb|AAM64675.1| trihelix DNA-binding protein (GT2) [Arabidopsis t... 44 6e-04
ref|NP_177815.1| trihelix DNA-binding protein (GT2); protein id:... 44 6e-04
>gb|AAL65124.1| GT-2 factor [Glycine max]
Length = 355
Score = 73.9 bits (180), Expect(2) = 1e-16
Identities = 37/77 (48%), Positives = 48/77 (62%), Gaps = 5/77 (6%)
Frame = -2
Query: 459 EDSKTCPYFHELEALYKEKSKTQNLFGASIHNMRTNEMMEPLMVQPEQQWRP-----PPQ 295
EDSKTCPYFH+LEALY+EK+K + M+ + MM PLMVQPEQQW P PP+
Sbjct: 250 EDSKTCPYFHQLEALYREKNKREG-------QMKPDSMMAPLMVQPEQQWPPQTHVVPPE 302
Query: 294 YEESVKKNDETNAREQD 244
+ND + R ++
Sbjct: 303 VTMGDAQNDPMDRRHEE 319
Score = 32.7 bits (73), Expect(2) = 1e-16
Identities = 14/33 (42%), Positives = 23/33 (69%)
Frame = -3
Query: 239 EEEDYDEEEGEGDSMQEDGGGNRYEIVTNKLSS 141
EE++ D+E G+ D ++D G + YEIV +K +S
Sbjct: 321 EEDEADKEIGDEDEDEDDEGSDNYEIVASKPAS 353
>dbj|BAB41080.1| DNA-binding protein DF1 [Pisum sativum]
Length = 682
Score = 68.6 bits (166), Expect = 3e-11
Identities = 35/73 (47%), Positives = 44/73 (59%)
Frame = -2
Query: 459 EDSKTCPYFHELEALYKEKSKTQNLFGASIHNMRTNEMMEPLMVQPEQQWRPPPQYEESV 280
EDSKTCPYFH+L+ALY+EK+K + S + MM PLMV+PEQQW P PQ
Sbjct: 612 EDSKTCPYFHQLDALYREKNKGE----GSSASRPEGTMMAPLMVRPEQQWPPQPQPPPVT 667
Query: 279 KKNDETNAREQDR 241
+ + E DR
Sbjct: 668 RADVTMEDAENDR 680
>ref|NP_177814.1| GT-like trihelix DNA-binding protein, putative; protein id:
At1g76880.1 [Arabidopsis thaliana]
gi|25406476|pir||F96797 probable GT-like trihelix
DNA-binding protein [imported] - Arabidopsis thaliana
gi|12322223|gb|AAG51144.1|AC079283_1 GT-like trihelix
DNA-binding protein, putative [Arabidopsis thaliana]
Length = 603
Score = 58.5 bits (140), Expect(2) = 4e-10
Identities = 30/56 (53%), Positives = 39/56 (69%), Gaps = 4/56 (7%)
Frame = -2
Query: 459 EDSKTCPYFHELEALYKEKSK--TQNLFGASIHN--MRTNEMMEPLMVQPEQQWRP 304
EDSKTCPYFH+L+ALY+E++K + N AS + + + PLMVQPEQQW P
Sbjct: 480 EDSKTCPYFHQLDALYRERNKFHSNNNIAASSSSSGLVKPDNSVPLMVQPEQQWPP 535
Score = 26.2 bits (56), Expect(2) = 4e-10
Identities = 11/36 (30%), Positives = 23/36 (63%)
Frame = -3
Query: 266 KQTQESRTEEEEDYDEEEGEGDSMQEDGGGNRYEIV 159
+Q + +E+YD+E+ E ++ +E+GG +E+V
Sbjct: 557 EQNFDDEEGTDEEYDDEDEEEENEEEEGG--EFELV 590
>gb|AAM64675.1| trihelix DNA-binding protein (GT2) [Arabidopsis thaliana]
Length = 548
Score = 44.3 bits (103), Expect = 6e-04
Identities = 22/48 (45%), Positives = 30/48 (61%)
Frame = -2
Query: 456 DSKTCPYFHELEALYKEKSKTQNLFGASIHNMRTNEMMEPLMVQPEQQ 313
DSKTCPYFH+LEALY E++K+ + + PLMV P++Q
Sbjct: 443 DSKTCPYFHQLEALYNERNKSGAM-----------PLPLPLMVTPQRQ 479
Score = 36.2 bits (82), Expect = 0.17
Identities = 28/79 (35%), Positives = 42/79 (52%), Gaps = 18/79 (22%)
Frame = -3
Query: 323 RSSSGGLPLSMKNRL--RRMMKQTQESRTEEEEDY--------DEEEGEGD----SMQED 186
R+ SG +PL + + +R + +QE++TE E D DEEEGE + +E+
Sbjct: 460 RNKSGAMPLPLPLMVTPQRQLLLSQETQTEFETDQREKVGDKEDEEEGESEEDEYDEEEE 519
Query: 185 GGG----NRYEIVTNKLSS 141
G G + +EIV NK SS
Sbjct: 520 GEGDNETSEFEIVLNKTSS 538
>ref|NP_177815.1| trihelix DNA-binding protein (GT2); protein id: At1g76890.1,
supported by cDNA: 3190. [Arabidopsis thaliana]
gi|481812|pir||S39484 DNA-binding protein GT-2 -
Arabidopsis thaliana gi|416490|emb|CAA51289.1| GT-2
factor [Arabidopsis thaliana]
gi|12322224|gb|AAG51145.1|AC079283_2 trihelix
DNA-binding protein (GT2) [Arabidopsis thaliana]
Length = 575
Score = 44.3 bits (103), Expect = 6e-04
Identities = 22/48 (45%), Positives = 30/48 (61%)
Frame = -2
Query: 456 DSKTCPYFHELEALYKEKSKTQNLFGASIHNMRTNEMMEPLMVQPEQQ 313
DSKTCPYFH+LEALY E++K+ + + PLMV P++Q
Sbjct: 470 DSKTCPYFHQLEALYNERNKSGAM-----------PLPLPLMVTPQRQ 506
Score = 36.2 bits (82), Expect = 0.17
Identities = 28/79 (35%), Positives = 42/79 (52%), Gaps = 18/79 (22%)
Frame = -3
Query: 323 RSSSGGLPLSMKNRL--RRMMKQTQESRTEEEEDY--------DEEEGEGD----SMQED 186
R+ SG +PL + + +R + +QE++TE E D DEEEGE + +E+
Sbjct: 487 RNKSGAMPLPLPLMVTPQRQLLLSQETQTEFETDQREKVGDKEDEEEGESEEDEYDEEEE 546
Query: 185 GGG----NRYEIVTNKLSS 141
G G + +EIV NK SS
Sbjct: 547 GEGDNETSEFEIVLNKTSS 565
Database: nr
Posted date: Apr 1, 2003 2:05 AM
Number of letters in database: 448,689,247
Number of sequences in database: 1,393,205
Lambda K H
0.318 0.135 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 410,701,234
Number of Sequences: 1393205
Number of extensions: 9301370
Number of successful extensions: 90123
Number of sequences better than 10.0: 250
Number of HSP's better than 10.0 without gapping: 57600
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 78530
length of database: 448,689,247
effective HSP length: 112
effective length of database: 292,650,287
effective search space used: 11998661767
frameshift window, decay const: 50, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
