Nr search
BLASTX 2.2.2 [Dec-14-2001]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= KMC005359A_C01 KMC005359A_c01
(502 letters)
Database: nr
1,393,205 sequences; 448,689,247 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
ref|NP_197822.1| putative protein; protein id: At5g24340.1 [Arab... 100 1e-41
dbj|BAC55820.1| OSJNBb0062P14.14 [Oryza sativa (japonica cultiva... 77 1e-28
ref|ZP_00119162.1| hypothetical protein [Cytophaga hutchinsonii] 43 0.002
ref|NP_176027.1| 3'-5' exonuclease, putative; protein id: At1g56... 36 0.28
pir||T14235 NADH2 dehydrogenase (ubiquinone) (EC 1.6.5.3) chain ... 35 0.36
>ref|NP_197822.1| putative protein; protein id: At5g24340.1 [Arabidopsis thaliana]
gi|10177895|dbj|BAB11227.1|
gene_id:K16H17.2~pir||D72332~similar to unknown protein
[Arabidopsis thaliana]
Length = 505
Score = 100 bits (250), Expect(2) = 1e-41
Identities = 51/76 (67%), Positives = 58/76 (76%)
Frame = +1
Query: 274 SPYILKLGFRFKQDLVYLSSTFCAHGCEPGIDKVEPYLDITSVYNQLQPKKQGRIASKQT 453
SP +LKLGFRFKQDLVYLSSTF HGCE G +V+ YLDITS+YN LQ K+ GR A K
Sbjct: 91 SPDVLKLGFRFKQDLVYLSSTFTQHGCEGGFQEVKQYLDITSIYNYLQHKRFGRKAPKDI 150
Query: 454 KSSSTICGEVLAISLS 501
KS + IC E+L ISLS
Sbjct: 151 KSLAAICKEMLDISLS 166
Score = 90.5 bits (223), Expect(2) = 1e-41
Identities = 46/87 (52%), Positives = 64/87 (72%), Gaps = 2/87 (2%)
Frame = +3
Query: 24 EVHLVTSTDSPEFTLLSRTLTQTSIIGLDAEWKPVRTHQTSFPAVSLLQIACQLSGGDSV 203
+++LV+STDS EFT L + T+++II LDAEWKP ++ +SFP V+LLQ+AC+LS V
Sbjct: 6 KIYLVSSTDSSEFTHLKWSFTRSTIIALDAEWKPQHSNTSSFPTVTLLQVACRLSHATDV 65
Query: 204 --VFLLDLLSLPLSSLWEPLREMLVVP 278
VFL+DL S+ L S+WE L +M V P
Sbjct: 66 SDVFLIDLSSIHLPSVWELLNDMFVSP 92
>dbj|BAC55820.1| OSJNBb0062P14.14 [Oryza sativa (japonica cultivar-group)]
Length = 501
Score = 77.4 bits (189), Expect(2) = 1e-28
Identities = 39/76 (51%), Positives = 53/76 (69%), Gaps = 1/76 (1%)
Frame = +1
Query: 277 PYILKLGFRFKQDLVYLSSTFCAH-GCEPGIDKVEPYLDITSVYNQLQPKKQGRIASKQT 453
P +LKLGFRFKQDLVYLS+TF A G G ++VEP+LD+T+ Y L+ + ++T
Sbjct: 121 PEVLKLGFRFKQDLVYLSATFAAALGSSAGFERVEPFLDVTNAYYYLKGHDMQKRLPRET 180
Query: 454 KSSSTICGEVLAISLS 501
KS +TIC E+L + LS
Sbjct: 181 KSLATICEELLGVYLS 196
Score = 70.1 bits (170), Expect(2) = 1e-28
Identities = 46/118 (38%), Positives = 60/118 (49%), Gaps = 22/118 (18%)
Frame = +3
Query: 3 PHNQKPFEVHLVTST-DSPEFTLLSRTLTQTSIIGLDAEWKPVRTHQT------------ 143
P P VHLVT SPE LL R+L ++ LDAEWKP R
Sbjct: 8 PPASPPLAVHLVTGGGSSPEHALLLRSLAAARVVALDAEWKPRRRGPAVADDPSAAAAAT 67
Query: 144 ----SFPAVSLLQIACQLSG-----GDSVVFLLDLLSLPLSSLWEPLREMLVVPLYLE 290
FP V+LLQ+AC+ G + VF++DLL++PL+ L EPLRE+ P L+
Sbjct: 68 PPPLQFPTVTLLQVACRGDGDGGGAAAAEVFVVDLLAVPLAELREPLRELFERPEVLK 125
>ref|ZP_00119162.1| hypothetical protein [Cytophaga hutchinsonii]
Length = 431
Score = 42.7 bits (99), Expect = 0.002
Identities = 27/73 (36%), Positives = 36/73 (48%), Gaps = 9/73 (12%)
Frame = +3
Query: 57 EFTLLSRTLTQTSIIGLDAEWKPVRTHQTSFPAVSLLQIACQLSGGD---------SVVF 209
E+T L RT T T I +EWK +RT +FP + L Q+A S D SV +
Sbjct: 243 EYTYLQRTQTVTCTID-SSEWKFLRTRPVNFPTIRLAQLAALFSNTDWYASFSSITSVKY 301
Query: 210 LLDLLSLPLSSLW 248
D L++ LS W
Sbjct: 302 AEDFLNVSLSDYW 314
>ref|NP_176027.1| 3'-5' exonuclease, putative; protein id: At1g56310.1 [Arabidopsis
thaliana] gi|25404113|pir||H96604 probable 3'-5'
exonuclease [imported] - Arabidopsis thaliana
gi|12321757|gb|AAG50917.1|AC069159_18 3'-5' exonuclease,
putative [Arabidopsis thaliana]
Length = 582
Score = 35.8 bits (81), Expect = 0.28
Identities = 17/45 (37%), Positives = 27/45 (59%)
Frame = +3
Query: 96 IIGLDAEWKPVRTHQTSFPAVSLLQIACQLSGGDSVVFLLDLLSL 230
++G+D EWKP + VS++QI G D+ +F+LDL+ L
Sbjct: 380 VVGIDCEWKPNYIKGSKQNKVSIMQI-----GSDTKIFILDLIKL 419
>pir||T14235 NADH2 dehydrogenase (ubiquinone) (EC 1.6.5.3) chain 5 -
Synechococcus sp. (strain PCC 7002)
gi|2232046|gb|AAB62184.1| NADH dehydrogenase subunit 5
[Synechococcus sp. PCC 7002]
Length = 616
Score = 35.4 bits (80), Expect = 0.36
Identities = 19/78 (24%), Positives = 39/78 (49%), Gaps = 1/78 (1%)
Frame = +3
Query: 135 HQTSFPAVSLLQIACQLSGGDSV-VFLLDLLSLPLSSLWEPLREMLVVPLYLETRIQIQA 311
HQ + P ++L I+ + GG ++ ++L + +S P+ +P+RE LY +
Sbjct: 484 HQLNLPLAAVLIISTMVGGGTAMYLYLNEKISKPIHIFSDPVREFFAKDLYTAELYKNTV 543
Query: 312 GFGVLVLHFLCPWLRTWY 365
F V ++ + WL ++
Sbjct: 544 IFAVALISKIIDWLDRYF 561
Database: nr
Posted date: Apr 1, 2003 2:05 AM
Number of letters in database: 448,689,247
Number of sequences in database: 1,393,205
Lambda K H
0.318 0.135 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 453,633,975
Number of Sequences: 1393205
Number of extensions: 10232492
Number of successful extensions: 36149
Number of sequences better than 10.0: 42
Number of HSP's better than 10.0 without gapping: 34068
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 36052
length of database: 448,689,247
effective HSP length: 114
effective length of database: 289,863,877
effective search space used: 15072921604
frameshift window, decay const: 50, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
