Nr search
BLASTX 2.2.2 [Dec-14-2001]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= KMC005358A_C01 KMC005358A_c01
(646 letters)
Database: nr
1,393,205 sequences; 448,689,247 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
ref|NP_196706.2| oxygen-evolving complex related protein; protei... 155 1e-37
pir||T48504 hypothetical protein F15N18.40 - Arabidopsis thalian... 149 1e-35
dbj|BAB39129.1| P0686E09.22 [Oryza sativa (japonica cultivar-gro... 143 2e-33
sp|P18212|PSBP_TOBAC Oxygen-evolving enhancer protein 2, chlorop... 41 0.012
emb|CAA45700.1| 23 kDa polypeptide of water-oxidizing complex of... 41 0.012
>ref|NP_196706.2| oxygen-evolving complex related protein; protein id: At5g11450.1,
supported by cDNA: gi_18252954 [Arabidopsis thaliana]
gi|18252955|gb|AAL62404.1| putative protein [Arabidopsis
thaliana] gi|21389651|gb|AAM48024.1| putative protein
[Arabidopsis thaliana]
Length = 297
Score = 155 bits (393), Expect(2) = 1e-37
Identities = 77/122 (63%), Positives = 92/122 (75%), Gaps = 6/122 (4%)
Frame = -1
Query: 625 DKKKWTAKDVADSVLADKSTLRVTSSQRLSESSVLDTHTGEIDGEPYWYYEYLVRISPTN 446
+KK W+AK+VADSVL+DKS LRVTSSQRL ESSVLD H +IDGEPYWYYEYLVR SPT
Sbjct: 170 EKKTWSAKEVADSVLSDKSALRVTSSQRLEESSVLDAHASDIDGEPYWYYEYLVRKSPTK 229
Query: 445 LAGEPNIFRHYLASTAERDGYLYSVSVSALSPQWKTMGPYLEKTVS---LVP---SYQPN 284
+A ++RHY++STAERDGYLY+++ S L QW MGP LE+ V L+P SY P
Sbjct: 230 IAEASKLYRHYISSTAERDGYLYTINASTLGKQWDKMGPVLERAVGSFRLLPPTDSYVPP 289
Query: 283 RK 278
K
Sbjct: 290 YK 291
Score = 35.4 bits (80), Expect = 0.66
Identities = 16/31 (51%), Positives = 21/31 (67%), Gaps = 3/31 (9%)
Frame = -2
Query: 345 GKQWDL---TWKKQ*ASFRLISPTENYVPPY 262
GKQWD ++ SFRL+ PT++YVPPY
Sbjct: 260 GKQWDKMGPVLERAVGSFRLLPPTDSYVPPY 290
Score = 22.7 bits (47), Expect(2) = 1e-37
Identities = 6/7 (85%), Positives = 7/7 (99%)
Frame = -3
Query: 260 QDPWRFW 240
+DPWRFW
Sbjct: 291 KDPWRFW 297
>pir||T48504 hypothetical protein F15N18.40 - Arabidopsis thaliana
gi|7573402|emb|CAB87705.1| putative protein [Arabidopsis
thaliana]
Length = 319
Score = 149 bits (376), Expect(2) = 1e-35
Identities = 77/128 (60%), Positives = 92/128 (71%), Gaps = 12/128 (9%)
Frame = -1
Query: 625 DKKKWTAKDVADSVLADKSTLRVTSSQRLSESSVLDTHTGEIDGEPYWYYEYLVRISPTN 446
+KK W+AK+VADSVL+DKS LRVTSSQRL ESSVLD H +IDGEPYWYYEYLVR SPT
Sbjct: 186 EKKTWSAKEVADSVLSDKSALRVTSSQRLEESSVLDAHASDIDGEPYWYYEYLVRKSPTK 245
Query: 445 LAGEPNIFRHYLASTAERDGYLYSVSVSALSPQW------KTMGPYLEKTVS---LVP-- 299
+A ++RHY++STAERDGYLY+++ S L QW MGP LE+ V L+P
Sbjct: 246 IAEASKLYRHYISSTAERDGYLYTINASTLGKQWDKGLYKMQMGPVLERAVGSFRLLPPT 305
Query: 298 -SYQPNRK 278
SY P K
Sbjct: 306 DSYVPPYK 313
Score = 33.1 bits (74), Expect = 3.3
Identities = 16/37 (43%), Positives = 21/37 (56%), Gaps = 9/37 (24%)
Frame = -2
Query: 345 GKQWDL---------TWKKQ*ASFRLISPTENYVPPY 262
GKQWD ++ SFRL+ PT++YVPPY
Sbjct: 276 GKQWDKGLYKMQMGPVLERAVGSFRLLPPTDSYVPPY 312
Score = 22.7 bits (47), Expect(2) = 1e-35
Identities = 6/7 (85%), Positives = 7/7 (99%)
Frame = -3
Query: 260 QDPWRFW 240
+DPWRFW
Sbjct: 313 KDPWRFW 319
>dbj|BAB39129.1| P0686E09.22 [Oryza sativa (japonica cultivar-group)]
Length = 360
Score = 143 bits (360), Expect = 2e-33
Identities = 65/105 (61%), Positives = 83/105 (78%)
Frame = -1
Query: 625 DKKKWTAKDVADSVLADKSTLRVTSSQRLSESSVLDTHTGEIDGEPYWYYEYLVRISPTN 446
DK KW KDVAD +LA+KS+L+VT+ QR++ESSVLD H+ ++DGEPYWYYEYLVR SPT
Sbjct: 207 DKSKWDPKDVADWILAEKSSLKVTTGQRMTESSVLDAHSSDVDGEPYWYYEYLVRKSPTQ 266
Query: 445 LAGEPNIFRHYLASTAERDGYLYSVSVSALSPQWKTMGPYLEKTV 311
A EPN+FRH +A TAERDGYLYS++ S LS QW++ +L +
Sbjct: 267 SAPEPNLFRHNVACTAERDGYLYSLNASTLSKQWESKIMFLHTRI 311
>sp|P18212|PSBP_TOBAC Oxygen-evolving enhancer protein 2, chloroplast precursor (OEE2)
(23 kDa subunit of oxygen evolving system of photosystem
II) (OEC 23 kDa subunit) (23 kDa thylakoid membrane
protein) gi|19911|emb|CAA39039.1| photosystem II 23kDa
polypeptide [Nicotiana tabacum]
Length = 265
Score = 41.2 bits (95), Expect = 0.012
Identities = 24/82 (29%), Positives = 40/82 (48%), Gaps = 1/82 (1%)
Frame = -1
Query: 550 SQRLSESSVLDTHTGEIDGEPYWYYEYLVRISPTNLAGEPNIFRHYLASTAERDGYLYSV 371
S ++ ++VL+T + E+ G+PY+Y L R + N G +H L + DG LY
Sbjct: 184 SDAVAIANVLETSSAEVGGKPYYYLSVLTRTADGNEGG-----KHQLITATVNDGKLYIC 238
Query: 370 SVSALSPQW-KTMGPYLEKTVS 308
A +W K ++E T +
Sbjct: 239 KAQAGDKRWFKGAKKFVENTAT 260
>emb|CAA45700.1| 23 kDa polypeptide of water-oxidizing complex of photosystem II
[Nicotiana tabacum]
Length = 205
Score = 41.2 bits (95), Expect = 0.012
Identities = 24/82 (29%), Positives = 40/82 (48%), Gaps = 1/82 (1%)
Frame = -1
Query: 550 SQRLSESSVLDTHTGEIDGEPYWYYEYLVRISPTNLAGEPNIFRHYLASTAERDGYLYSV 371
S ++ ++VL+T + E+ G+PY+Y L R + N G +H L + DG LY
Sbjct: 124 SDAVAIANVLETSSAEVGGKPYYYLSVLTRTADGNEGG-----KHQLITATVNDGKLYIC 178
Query: 370 SVSALSPQW-KTMGPYLEKTVS 308
A +W K ++E T +
Sbjct: 179 KAQAGDKRWLKGAKKFVENTAT 200
Database: nr
Posted date: Apr 1, 2003 2:05 AM
Number of letters in database: 448,689,247
Number of sequences in database: 1,393,205
Lambda K H
0.318 0.135 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 527,034,757
Number of Sequences: 1393205
Number of extensions: 11611236
Number of successful extensions: 29383
Number of sequences better than 10.0: 22
Number of HSP's better than 10.0 without gapping: 28397
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 29378
length of database: 448,689,247
effective HSP length: 118
effective length of database: 284,291,057
effective search space used: 27291941472
frameshift window, decay const: 50, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
