Nr search
BLASTX 2.2.2 [Dec-14-2001]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= KMC005356A_C01 KMC005356A_c01
(505 letters)
Database: nr
1,393,205 sequences; 448,689,247 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
ref|NP_191741.1| putative protein; protein id: At3g61820.1, supp... 68 1e-24
ref|NP_171637.1| chloroplast nucleoid DNA binding protein, putat... 68 3e-21
gb|AAM66061.1| chloroplast nucleoid DNA binding protein, putativ... 67 5e-21
dbj|BAB63755.1| nucleoid DNA-binding protein cnd41-like protein ... 65 4e-18
gb|AAO41867.1| unknown protein [Arabidopsis thaliana] 57 1e-14
>ref|NP_191741.1| putative protein; protein id: At3g61820.1, supported by cDNA:
gi_14532549 [Arabidopsis thaliana]
gi|11357465|pir||T47974 hypothetical protein F15G16.210
- Arabidopsis thaliana gi|6850873|emb|CAB71112.1|
putative protein [Arabidopsis thaliana]
Length = 483
Score = 67.8 bits (164), Expect(3) = 1e-24
Identities = 33/55 (60%), Positives = 37/55 (67%)
Frame = -2
Query: 504 GGVIIDSGTTVTPLIIPAYLAFRHAFRFAAAHLNRGPETESFDTCYDLSGLQRAK 340
GGVIIDSGT+VT L PAY+A R AFR A L R P FDTC+DLSG+ K
Sbjct: 359 GGVIIDSGTSVTRLTQPAYVALRDAFRLGATKLKRAPSYSLFDTCFDLSGMTTVK 413
Score = 55.1 bits (131), Expect(3) = 1e-24
Identities = 27/43 (62%), Positives = 28/43 (64%)
Frame = -1
Query: 250 GPSCFAFAQWGGPFSIIGNIPPPGIRIAYDLAGSRVGFAPREC 122
G CFAFA G SIIGNI G R+AYDL GSRVGF R C
Sbjct: 441 GRFCFAFAGTMGSLSIIGNIQQQGFRVAYDLVGSRVGFLSRAC 483
Score = 31.2 bits (69), Expect(3) = 1e-24
Identities = 15/32 (46%), Positives = 18/32 (55%)
Frame = -3
Query: 356 GSREPKVPTLVLHFRDVDVSFPAKNVLATLKT 261
G KVPT+V HF +VS PA N L + T
Sbjct: 408 GMTTVKVPTVVFHFGGGEVSLPASNYLIPVNT 439
>ref|NP_171637.1| chloroplast nucleoid DNA binding protein, putative; protein id:
At1g01300.1, supported by cDNA: 7567. [Arabidopsis
thaliana] gi|25518405|pir||C86143 hypothetical protein
F6F3.10 - Arabidopsis thaliana
gi|9665144|gb|AAF97328.1|AC023628_9 Unknown protein
[Arabidopsis thaliana] gi|22135930|gb|AAM91547.1|
chloroplast nucleoid DNA binding protein, putative
[Arabidopsis thaliana]
Length = 485
Score = 68.2 bits (165), Expect(2) = 3e-21
Identities = 33/55 (60%), Positives = 38/55 (69%)
Frame = -2
Query: 504 GGVIIDSGTTVTPLIIPAYLAFRHAFRFAAAHLNRGPETESFDTCYDLSGLQRAK 340
GGVIIDSGT+VT LI PAY+A R AFR A L R P+ FDTC+DLS + K
Sbjct: 360 GGVIIDSGTSVTRLIRPAYIAMRDAFRVGAKTLKRAPDFSLFDTCFDLSNMNEVK 414
Score = 54.7 bits (130), Expect(2) = 3e-21
Identities = 27/43 (62%), Positives = 28/43 (64%)
Frame = -1
Query: 250 GPSCFAFAQWGGPFSIIGNIPPPGIRIAYDLAGSRVGFAPREC 122
G CFAFA G SIIGNI G R+ YDLA SRVGFAP C
Sbjct: 442 GKFCFAFAGTMGGLSIIGNIQQQGFRVVYDLASSRVGFAPGGC 484
Score = 41.2 bits (95), Expect = 0.007
Identities = 23/49 (46%), Positives = 26/49 (52%)
Frame = -3
Query: 347 EPKVPTLVLHFRDVDVSFPAKNVLATLKTNQDRTFMLRIRSMGWSLFHN 201
E KVPT+VLHFR DVS PA N L + TN F G S+ N
Sbjct: 412 EVKVPTVVLHFRGADVSLPATNYLIPVDTNGKFCFAFAGTMGGLSIIGN 460
>gb|AAM66061.1| chloroplast nucleoid DNA binding protein, putative [Arabidopsis
thaliana]
Length = 485
Score = 67.4 bits (163), Expect(2) = 5e-21
Identities = 33/55 (60%), Positives = 37/55 (67%)
Frame = -2
Query: 504 GGVIIDSGTTVTPLIIPAYLAFRHAFRFAAAHLNRGPETESFDTCYDLSGLQRAK 340
GGVIIDSGT+VT LI PAY+A R AFR A L R P FDTC+DLS + K
Sbjct: 360 GGVIIDSGTSVTRLIRPAYIAMRDAFRVGAKTLKRAPNFSLFDTCFDLSNMNEVK 414
Score = 54.7 bits (130), Expect(2) = 5e-21
Identities = 27/43 (62%), Positives = 28/43 (64%)
Frame = -1
Query: 250 GPSCFAFAQWGGPFSIIGNIPPPGIRIAYDLAGSRVGFAPREC 122
G CFAFA G SIIGNI G R+ YDLA SRVGFAP C
Sbjct: 442 GKFCFAFAGTMGGLSIIGNIQQQGFRVVYDLASSRVGFAPGGC 484
Score = 40.8 bits (94), Expect = 0.009
Identities = 23/49 (46%), Positives = 26/49 (52%)
Frame = -3
Query: 347 EPKVPTLVLHFRDVDVSFPAKNVLATLKTNQDRTFMLRIRSMGWSLFHN 201
E KVPT+VLHFR DVS PA N L + TN F G S+ N
Sbjct: 412 EVKVPTVVLHFRRADVSLPATNYLIPVDTNGKFCFAFAGTMGGLSIIGN 460
>dbj|BAB63755.1| nucleoid DNA-binding protein cnd41-like protein [Oryza sativa
(japonica cultivar-group)]
Length = 500
Score = 64.7 bits (156), Expect(2) = 4e-18
Identities = 38/66 (57%), Positives = 42/66 (63%), Gaps = 1/66 (1%)
Frame = -2
Query: 504 GGVIIDSGTTVTPLIIPAYLAFRHAFRFAAAHLNRGPETES-FDTCYDLSGLQRAKGSHS 328
GGVI+DSGT+VT L PAY A R AFR AAA L P S FDTCYDLSGL+ K
Sbjct: 374 GGVIVDSGTSVTRLARPAYAALRDAFRAAAAGLRLSPGGFSLFDTCYDLSGLKVVKVPTV 433
Query: 327 GAPFSG 310
F+G
Sbjct: 434 SMHFAG 439
Score = 47.8 bits (112), Expect(2) = 4e-18
Identities = 22/43 (51%), Positives = 26/43 (60%)
Frame = -1
Query: 250 GPSCFAFAQWGGPFSIIGNIPPPGIRIAYDLAGSRVGFAPREC 122
G CFAFA G SIIGNI G R+ +D G R+GF P+ C
Sbjct: 458 GTFCFAFAGTDGGVSIIGNIQQQGFRVVFDGDGQRLGFVPKGC 500
>gb|AAO41867.1| unknown protein [Arabidopsis thaliana]
Length = 470
Score = 56.6 bits (135), Expect(2) = 1e-14
Identities = 27/50 (54%), Positives = 33/50 (66%)
Frame = -2
Query: 504 GGVIIDSGTTVTPLIIPAYLAFRHAFRFAAAHLNRGPETESFDTCYDLSG 355
GGV++D+GT VT L AY+AFR F+ A+L R FDTCYDLSG
Sbjct: 345 GGVVMDTGTAVTRLPTAAYVAFRDGFKSQTANLPRASGVSIFDTCYDLSG 394
Score = 43.9 bits (102), Expect(2) = 1e-14
Identities = 27/63 (42%), Positives = 35/63 (54%)
Frame = -1
Query: 310 MLTCPSRRRTFLLR*KPTKTGPSCFAFAQWGGPFSIIGNIPPPGIRIAYDLAGSRVGFAP 131
+LT P+R FL+ +G CFAFA SIIGNI GI++++D A VGF P
Sbjct: 412 VLTLPARN--FLM--PVDDSGTYCFAFAASPTGLSIIGNIQQEGIQVSFDGANGFVGFGP 467
Query: 130 REC 122
C
Sbjct: 468 NVC 470
Database: nr
Posted date: Apr 1, 2003 2:05 AM
Number of letters in database: 448,689,247
Number of sequences in database: 1,393,205
Lambda K H
0.318 0.135 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 479,341,398
Number of Sequences: 1393205
Number of extensions: 11419295
Number of successful extensions: 27128
Number of sequences better than 10.0: 67
Number of HSP's better than 10.0 without gapping: 26326
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 27117
length of database: 448,689,247
effective HSP length: 114
effective length of database: 289,863,877
effective search space used: 15362785481
frameshift window, decay const: 50, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
