Nr search
BLASTX 2.2.2 [Dec-14-2001]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= KMC005355A_C01 KMC005355A_c01
(455 letters)
Database: nr
1,393,205 sequences; 448,689,247 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
gb|AAB97006.1| GAST-like gene product [Fragaria x ananassa] 112 2e-24
emb|CAC44012.1| snakin2 [Solanum tuberosum] 107 7e-23
emb|CAC44011.1| snakin2 [Solanum tuberosum] 104 4e-22
gb|AAC15460.1| cold-regulated LTCOR12 [Lavatera thuringiaca] 103 8e-22
gb|AAM67072.1| GAST1-like protein [Arabidopsis thaliana] 102 2e-21
>gb|AAB97006.1| GAST-like gene product [Fragaria x ananassa]
Length = 91
Score = 112 bits (279), Expect = 2e-24
Identities = 45/60 (75%), Positives = 54/60 (90%)
Frame = -3
Query: 444 DCKGAGSARCRLSSRPYLCQRACGTCCKRCNCVPPGTSGYHDVCPCYASLTTPGGRPQCP 265
DC GA ARCRLSSRP+LC+RACGTCC+RC+CVPPGT+G +DVCPCYA+LTT GG+ +CP
Sbjct: 32 DCGGACKARCRLSSRPHLCKRACGTCCQRCSCVPPGTAGNYDVCPCYATLTTHGGKRKCP 91
>emb|CAC44012.1| snakin2 [Solanum tuberosum]
Length = 104
Score = 107 bits (266), Expect = 7e-23
Identities = 45/60 (75%), Positives = 49/60 (81%)
Frame = -3
Query: 444 DCKGAGSARCRLSSRPYLCQRACGTCCKRCNCVPPGTSGYHDVCPCYASLTTPGGRPQCP 265
DC GA +ARCRLSSRP LC RACGTCC RCNCVPPGTSG + CPCYASLTT G + +CP
Sbjct: 45 DCGGACAARCRLSSRPRLCNRACGTCCARCNCVPPGTSGNTETCPCYASLTTHGNKRKCP 104
>emb|CAC44011.1| snakin2 [Solanum tuberosum]
Length = 104
Score = 104 bits (260), Expect = 4e-22
Identities = 44/59 (74%), Positives = 48/59 (80%)
Frame = -3
Query: 441 CKGAGSARCRLSSRPYLCQRACGTCCKRCNCVPPGTSGYHDVCPCYASLTTPGGRPQCP 265
C GA +ARCRLSSRP LC RACGTCC RCNCVPPGTSG + CPCYASLTT G + +CP
Sbjct: 46 CGGACAARCRLSSRPRLCNRACGTCCARCNCVPPGTSGNTETCPCYASLTTHGNKRKCP 104
>gb|AAC15460.1| cold-regulated LTCOR12 [Lavatera thuringiaca]
Length = 101
Score = 103 bits (257), Expect = 8e-22
Identities = 42/60 (70%), Positives = 51/60 (85%)
Frame = -3
Query: 444 DCKGAGSARCRLSSRPYLCQRACGTCCKRCNCVPPGTSGYHDVCPCYASLTTPGGRPQCP 265
DC GA +ARC+LSSRP+LC+RACGTCC R CVPPGT+G ++CPCYASLTT GG+ +CP
Sbjct: 42 DCGGACAARCQLSSRPHLCKRACGTCCARSRCVPPGTAGNQEMCPCYASLTTHGGKRKCP 101
>gb|AAM67072.1| GAST1-like protein [Arabidopsis thaliana]
Length = 98
Score = 102 bits (253), Expect = 2e-21
Identities = 44/60 (73%), Positives = 46/60 (76%)
Frame = -3
Query: 444 DCKGAGSARCRLSSRPYLCQRACGTCCKRCNCVPPGTSGYHDVCPCYASLTTPGGRPQCP 265
DC A ARCRLS RP LC RACGTCC RCNCVPPGT G +D C CYASLTT GGR +CP
Sbjct: 39 DCXSACVARCRLSRRPRLCHRACGTCCYRCNCVPPGTYGNYDKCQCYASLTTHGGRRKCP 98
Database: nr
Posted date: Apr 1, 2003 2:05 AM
Number of letters in database: 448,689,247
Number of sequences in database: 1,393,205
Lambda K H
0.318 0.135 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 406,800,696
Number of Sequences: 1393205
Number of extensions: 9346759
Number of successful extensions: 29292
Number of sequences better than 10.0: 103
Number of HSP's better than 10.0 without gapping: 27381
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 29093
length of database: 448,689,247
effective HSP length: 112
effective length of database: 292,650,287
effective search space used: 11413361193
frameshift window, decay const: 50, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
