Nr search
BLASTX 2.2.2 [Dec-14-2001]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= KMC005353A_C01 KMC005353A_c01
(602 letters)
Database: nr
1,393,205 sequences; 448,689,247 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
sp|P10933|FENR_PEA Ferredoxin--NADP reductase, leaf isozyme, chl... 155 4e-61
pdb|1QG0|A Chain A, Wild-Type Pea Fnr gi|4930124|pdb|1QG0|B Chai... 155 4e-61
pdb|1QGA|A Chain A, Pea Fnr Y308w Mutant In Complex With Nadp+ g... 155 1e-60
ref|NP_201420.1| ferredoxin-NADP+ reductase; protein id: At5g661... 155 2e-60
pdb|1QFY|A Chain A, Pea Fnr Y308s Mutant In Complex With Nadp+ g... 155 2e-60
>sp|P10933|FENR_PEA Ferredoxin--NADP reductase, leaf isozyme, chloroplast precursor
(FNR) gi|81898|pir||S04030 ferredoxin-NADP reductase (EC
1.18.1.2) precursor - garden pea
gi|20722|emb|CAA30978.1| ferredoxin-NADH+ reductase
preprotein (AA -52 to 308) [Pisum sativum]
gi|226545|prf||1601517A ferredoxin NADP reductase
Length = 360
Score = 155 bits (392), Expect(2) = 4e-61
Identities = 73/79 (92%), Positives = 78/79 (98%)
Frame = -2
Query: 601 DDYKFNGLAWLFLGVPTSSSLLYKEEFEKMKEKSPENFRLDFAVSREQTNDKGEKMYIQT 422
+DY+FNGLAWLFLGVPTSSSLLYKEEFEKMKEK+PENFRLDFAVSREQ NDKGEKMYIQT
Sbjct: 236 EDYQFNGLAWLFLGVPTSSSLLYKEEFEKMKEKAPENFRLDFAVSREQVNDKGEKMYIQT 295
Query: 421 RMAQYAEELWQLLKKDHTF 365
RMAQYAEELW+LLKKD+TF
Sbjct: 296 RMAQYAEELWELLKKDNTF 314
Score = 101 bits (252), Expect(2) = 4e-61
Identities = 47/53 (88%), Positives = 49/53 (91%)
Frame = -3
Query: 384 LRKTTPFVYMCGLKGMEKGIDDIMVSLAARDGIDWIEYKRQLKKAEQWNVEVY 226
L+K FVYMCGLKGMEKGIDDIMVSLAA+DGIDWIEYKR LKKAEQWNVEVY
Sbjct: 308 LKKDNTFVYMCGLKGMEKGIDDIMVSLAAKDGIDWIEYKRTLKKAEQWNVEVY 360
>pdb|1QG0|A Chain A, Wild-Type Pea Fnr gi|4930124|pdb|1QG0|B Chain B, Wild-Type
Pea Fnr
Length = 308
Score = 155 bits (392), Expect(2) = 4e-61
Identities = 73/79 (92%), Positives = 78/79 (98%)
Frame = -2
Query: 601 DDYKFNGLAWLFLGVPTSSSLLYKEEFEKMKEKSPENFRLDFAVSREQTNDKGEKMYIQT 422
+DY+FNGLAWLFLGVPTSSSLLYKEEFEKMKEK+PENFRLDFAVSREQ NDKGEKMYIQT
Sbjct: 184 EDYQFNGLAWLFLGVPTSSSLLYKEEFEKMKEKAPENFRLDFAVSREQVNDKGEKMYIQT 243
Query: 421 RMAQYAEELWQLLKKDHTF 365
RMAQYAEELW+LLKKD+TF
Sbjct: 244 RMAQYAEELWELLKKDNTF 262
Score = 101 bits (252), Expect(2) = 4e-61
Identities = 47/53 (88%), Positives = 49/53 (91%)
Frame = -3
Query: 384 LRKTTPFVYMCGLKGMEKGIDDIMVSLAARDGIDWIEYKRQLKKAEQWNVEVY 226
L+K FVYMCGLKGMEKGIDDIMVSLAA+DGIDWIEYKR LKKAEQWNVEVY
Sbjct: 256 LKKDNTFVYMCGLKGMEKGIDDIMVSLAAKDGIDWIEYKRTLKKAEQWNVEVY 308
>pdb|1QGA|A Chain A, Pea Fnr Y308w Mutant In Complex With Nadp+
gi|4930129|pdb|1QGA|B Chain B, Pea Fnr Y308w Mutant In
Complex With Nadp+
Length = 308
Score = 155 bits (392), Expect(2) = 1e-60
Identities = 73/79 (92%), Positives = 78/79 (98%)
Frame = -2
Query: 601 DDYKFNGLAWLFLGVPTSSSLLYKEEFEKMKEKSPENFRLDFAVSREQTNDKGEKMYIQT 422
+DY+FNGLAWLFLGVPTSSSLLYKEEFEKMKEK+PENFRLDFAVSREQ NDKGEKMYIQT
Sbjct: 184 EDYQFNGLAWLFLGVPTSSSLLYKEEFEKMKEKAPENFRLDFAVSREQVNDKGEKMYIQT 243
Query: 421 RMAQYAEELWQLLKKDHTF 365
RMAQYAEELW+LLKKD+TF
Sbjct: 244 RMAQYAEELWELLKKDNTF 262
Score = 99.8 bits (247), Expect(2) = 1e-60
Identities = 46/53 (86%), Positives = 49/53 (91%)
Frame = -3
Query: 384 LRKTTPFVYMCGLKGMEKGIDDIMVSLAARDGIDWIEYKRQLKKAEQWNVEVY 226
L+K FVYMCGLKGMEKGIDDIMVSLAA+DGIDWIEYKR LKKAEQWNVEV+
Sbjct: 256 LKKDNTFVYMCGLKGMEKGIDDIMVSLAAKDGIDWIEYKRTLKKAEQWNVEVW 308
>ref|NP_201420.1| ferredoxin-NADP+ reductase; protein id: At5g66190.1, supported by
cDNA: gi_18175824, supported by cDNA: gi_20465660
[Arabidopsis thaliana] gi|10177134|dbj|BAB10424.1|
ferredoxin-NADP+ reductase [Arabidopsis thaliana]
gi|18175825|gb|AAL59934.1| putative ferredoxin-NADP+
reductase [Arabidopsis thaliana]
gi|20465661|gb|AAM20299.1| putative ferredoxin-NADP+
reductase [Arabidopsis thaliana]
Length = 360
Score = 155 bits (391), Expect(2) = 2e-60
Identities = 72/79 (91%), Positives = 79/79 (99%)
Frame = -2
Query: 601 DDYKFNGLAWLFLGVPTSSSLLYKEEFEKMKEKSPENFRLDFAVSREQTNDKGEKMYIQT 422
+DYKFNGLAWLFLGVPTSSSLLYKEEFEKMKEK+P+NFRLDFAVSREQTN+KGEKMYIQT
Sbjct: 236 EDYKFNGLAWLFLGVPTSSSLLYKEEFEKMKEKNPDNFRLDFAVSREQTNEKGEKMYIQT 295
Query: 421 RMAQYAEELWQLLKKDHTF 365
RMA+YAEELW+LLKKD+TF
Sbjct: 296 RMAEYAEELWELLKKDNTF 314
Score = 99.8 bits (247), Expect(2) = 2e-60
Identities = 44/53 (83%), Positives = 50/53 (94%)
Frame = -3
Query: 384 LRKTTPFVYMCGLKGMEKGIDDIMVSLAARDGIDWIEYKRQLKKAEQWNVEVY 226
L+K FVYMCGLKGMEKGIDDIMVSLAA+DGIDW+EYK+QLK++EQWNVEVY
Sbjct: 308 LKKDNTFVYMCGLKGMEKGIDDIMVSLAAKDGIDWLEYKKQLKRSEQWNVEVY 360
>pdb|1QFY|A Chain A, Pea Fnr Y308s Mutant In Complex With Nadp+
gi|4930120|pdb|1QFY|B Chain B, Pea Fnr Y308s Mutant In
Complex With Nadp+ gi|4930121|pdb|1QFZ|A Chain A, Pea
Fnr Y308s Mutant In Complex With Nadph
gi|4930122|pdb|1QFZ|B Chain B, Pea Fnr Y308s Mutant In
Complex With Nadph
Length = 308
Score = 155 bits (392), Expect(2) = 2e-60
Identities = 73/79 (92%), Positives = 78/79 (98%)
Frame = -2
Query: 601 DDYKFNGLAWLFLGVPTSSSLLYKEEFEKMKEKSPENFRLDFAVSREQTNDKGEKMYIQT 422
+DY+FNGLAWLFLGVPTSSSLLYKEEFEKMKEK+PENFRLDFAVSREQ NDKGEKMYIQT
Sbjct: 184 EDYQFNGLAWLFLGVPTSSSLLYKEEFEKMKEKAPENFRLDFAVSREQVNDKGEKMYIQT 243
Query: 421 RMAQYAEELWQLLKKDHTF 365
RMAQYAEELW+LLKKD+TF
Sbjct: 244 RMAQYAEELWELLKKDNTF 262
Score = 99.0 bits (245), Expect(2) = 2e-60
Identities = 46/52 (88%), Positives = 48/52 (91%)
Frame = -3
Query: 384 LRKTTPFVYMCGLKGMEKGIDDIMVSLAARDGIDWIEYKRQLKKAEQWNVEV 229
L+K FVYMCGLKGMEKGIDDIMVSLAA+DGIDWIEYKR LKKAEQWNVEV
Sbjct: 256 LKKDNTFVYMCGLKGMEKGIDDIMVSLAAKDGIDWIEYKRTLKKAEQWNVEV 307
Database: nr
Posted date: Apr 1, 2003 2:05 AM
Number of letters in database: 448,689,247
Number of sequences in database: 1,393,205
Lambda K H
0.318 0.135 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 546,091,520
Number of Sequences: 1393205
Number of extensions: 11648489
Number of successful extensions: 28948
Number of sequences better than 10.0: 152
Number of HSP's better than 10.0 without gapping: 27905
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 28935
length of database: 448,689,247
effective HSP length: 117
effective length of database: 285,684,262
effective search space used: 23711793746
frameshift window, decay const: 50, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
