Nr search
BLASTX 2.2.2 [Dec-14-2001]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= KMC005350A_C01 KMC005350A_c01
(700 letters)
Database: nr
1,393,205 sequences; 448,689,247 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
ref|NP_176310.1| hypothetical protein; protein id: At1g61150.1 [... 211 8e-54
pir||D96637 hypothetical protein F11P17.12 [imported] - Arabidop... 204 1e-51
ref|XP_130746.1| RIKEN cDNA 2310003C23 [Mus musculus] gi|2505558... 132 6e-30
gb|AAH32120.1| chromosome 20 open reading frame 11 [Homo sapiens] 131 1e-29
ref|NP_060366.1| chromosome 20 open reading frame 11; two hybrid... 131 1e-29
>ref|NP_176310.1| hypothetical protein; protein id: At1g61150.1 [Arabidopsis
thaliana] gi|27808548|gb|AAO24554.1| At1g61150
[Arabidopsis thaliana]
Length = 243
Score = 211 bits (537), Expect = 8e-54
Identities = 105/125 (84%), Positives = 112/125 (89%)
Frame = -3
Query: 698 HLQQQRLIELIRNGKVEEALDFAQEELAPRGEENHSFLEELERTVALLAFEDVSNCPVGE 519
HLQQQRLIELIR GK EEAL+FAQEELAPRGEEN +FLEELE+TVALL F+D S CPV E
Sbjct: 118 HLQQQRLIELIRQGKTEEALEFAQEELAPRGEENQAFLEELEKTVALLVFDDASTCPVKE 177
Query: 518 LLDISQRLKTASEVNAAILTSQSHEKDPKLPSLLKMLIWAQNQLDEKAAYPHINDISKAT 339
LLD+S RLKTASEVNAAILTSQSHEKDPKLPSLLKMLIWAQ QLDEKA YPHIND+S
Sbjct: 178 LLDLSHRLKTASEVNAAILTSQSHEKDPKLPSLLKMLIWAQTQLDEKAVYPHINDLSTGK 237
Query: 338 LEDPA 324
LEDP+
Sbjct: 238 LEDPS 242
>pir||D96637 hypothetical protein F11P17.12 [imported] - Arabidopsis thaliana
gi|2443886|gb|AAB71479.1| Unknown protein [Arabidopsis
thaliana]
Length = 240
Score = 204 bits (519), Expect = 1e-51
Identities = 102/119 (85%), Positives = 108/119 (90%)
Frame = -3
Query: 698 HLQQQRLIELIRNGKVEEALDFAQEELAPRGEENHSFLEELERTVALLAFEDVSNCPVGE 519
HLQQQRLIELIR GK EEAL+FAQEELAPRGEEN +FLEELE+TVALL F+D S CPV E
Sbjct: 118 HLQQQRLIELIRQGKTEEALEFAQEELAPRGEENQAFLEELEKTVALLVFDDASTCPVKE 177
Query: 518 LLDISQRLKTASEVNAAILTSQSHEKDPKLPSLLKMLIWAQNQLDEKAAYPHINDISKA 342
LLD+S RLKTASEVNAAILTSQSHEKDPKLPSLLKMLIWAQ QLDEKA YPHIND+S A
Sbjct: 178 LLDLSHRLKTASEVNAAILTSQSHEKDPKLPSLLKMLIWAQTQLDEKAVYPHINDLSTA 236
>ref|XP_130746.1| RIKEN cDNA 2310003C23 [Mus musculus] gi|25055582|ref|XP_203792.1|
RIKEN cDNA 2310003C23 [Mus musculus]
gi|27705502|ref|XP_215967.1| similar to RIKEN cDNA
2310003C23 [Mus musculus] [Rattus norvegicus]
gi|28201785|sp|Q9D7M1|CT11_MOUSE Protein C20orf11
homolog gi|12843691|dbj|BAB26074.1| unnamed protein
product [Mus musculus]
Length = 228
Score = 132 bits (331), Expect = 6e-30
Identities = 67/125 (53%), Positives = 88/125 (69%), Gaps = 1/125 (0%)
Frame = -3
Query: 698 HLQQQRLIELIRNGKVEEALDFAQEELAPRGEENHSFLEELERTVALLAFEDVSNCPVGE 519
HLQQQ LIELIR + E AL+FAQ +LA +GEE+ L E+ERT+ALLAF+ P G+
Sbjct: 103 HLQQQHLIELIRQRETEAALEFAQTQLAEQGEESRECLTEMERTLALLAFDSPEESPFGD 162
Query: 518 LLDISQRLKTASEVNAAILTSQSHEKDPKLPSLLKMLIWAQNQLDE-KAAYPHINDISKA 342
LL + QR K SEVN A+L ++ E PKL LLK+L+WAQN+LD+ K YP + D+SK
Sbjct: 163 LLHMMQRQKVWSEVNQAVLDYENRESTPKLAKLLKLLLWAQNELDQKKVKYPKMTDLSKG 222
Query: 341 TLEDP 327
+E+P
Sbjct: 223 VIEEP 227
>gb|AAH32120.1| chromosome 20 open reading frame 11 [Homo sapiens]
Length = 228
Score = 131 bits (329), Expect = 1e-29
Identities = 67/125 (53%), Positives = 87/125 (69%), Gaps = 1/125 (0%)
Frame = -3
Query: 698 HLQQQRLIELIRNGKVEEALDFAQEELAPRGEENHSFLEELERTVALLAFEDVSNCPVGE 519
HLQQQ LIELIR + E AL+FAQ +LA +GEE+ L E+ERT+ALLAF+ P G+
Sbjct: 103 HLQQQHLIELIRQRETEAALEFAQTQLAEQGEESRECLTEMERTLALLAFDSPEESPFGD 162
Query: 518 LLDISQRLKTASEVNAAILTSQSHEKDPKLPSLLKMLIWAQNQLDE-KAAYPHINDISKA 342
LL QR K SEVN A+L ++ E PKL LLK+L+WAQN+LD+ K YP + D+SK
Sbjct: 163 LLHTMQRQKVWSEVNQAVLDYENRESTPKLAKLLKLLLWAQNELDQKKVKYPKMTDLSKG 222
Query: 341 TLEDP 327
+E+P
Sbjct: 223 VIEEP 227
>ref|NP_060366.1| chromosome 20 open reading frame 11; two hybrid associated protein
1 [Homo sapiens] gi|28201788|sp|Q9NWU2|CT11_HUMAN
Protein C20orf11 gi|7020818|dbj|BAA91285.1| unnamed
protein product [Homo sapiens]
gi|10185083|emb|CAC08553.1| bA305P22.1 (continues in
dJ536E14 (AL117379)) [Homo sapiens]
Length = 228
Score = 131 bits (329), Expect = 1e-29
Identities = 67/125 (53%), Positives = 87/125 (69%), Gaps = 1/125 (0%)
Frame = -3
Query: 698 HLQQQRLIELIRNGKVEEALDFAQEELAPRGEENHSFLEELERTVALLAFEDVSNCPVGE 519
HLQQQ LIELIR + E AL+FAQ +LA +GEE+ L E+ERT+ALLAF+ P G+
Sbjct: 103 HLQQQHLIELIRQRETEAALEFAQTQLAEQGEESRECLTEMERTLALLAFDSPEESPFGD 162
Query: 518 LLDISQRLKTASEVNAAILTSQSHEKDPKLPSLLKMLIWAQNQLDE-KAAYPHINDISKA 342
LL QR K SEVN A+L ++ E PKL LLK+L+WAQN+LD+ K YP + D+SK
Sbjct: 163 LLHTMQRQKVWSEVNQAVLDYENRESTPKLAKLLKLLLWAQNELDQKKVKYPKMTDLSKG 222
Query: 341 TLEDP 327
+E+P
Sbjct: 223 VIEEP 227
Database: nr
Posted date: Apr 1, 2003 2:05 AM
Number of letters in database: 448,689,247
Number of sequences in database: 1,393,205
Lambda K H
0.318 0.135 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 581,830,285
Number of Sequences: 1393205
Number of extensions: 12308273
Number of successful extensions: 34172
Number of sequences better than 10.0: 64
Number of HSP's better than 10.0 without gapping: 32188
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 33984
length of database: 448,689,247
effective HSP length: 119
effective length of database: 282,897,852
effective search space used: 31967457276
frameshift window, decay const: 50, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
