Nr search
BLASTX 2.2.2 [Dec-14-2001]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= KMC005348A_C01 KMC005348A_c01
(674 letters)
Database: nr
1,393,205 sequences; 448,689,247 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
gb|AAL92026.1|AF484959_1 tubulin beta-1 [Gossypium hirsutum] gi|... 388 e-107
sp|P37392|TBB1_LUPAL TUBULIN BETA-1 CHAIN gi|486734|pir||S35142 ... 386 e-106
pir||JA0049 Tubulin beta-2 chain - soybean 385 e-106
sp|P28551|TBB3_SOYBN TUBULIN BETA CHAIN gi|312989|emb|CAA42777.1... 382 e-105
sp|P12460|TBB2_SOYBN TUBULIN BETA-2 CHAIN gi|170062|gb|AAA34010.... 382 e-105
>gb|AAL92026.1|AF484959_1 tubulin beta-1 [Gossypium hirsutum]
gi|19569609|gb|AAL92118.1|AF487511_1 beta-tubulin
[Gossypium hirsutum]
Length = 445
Score = 388 bits (996), Expect = e-107
Identities = 185/187 (98%), Positives = 186/187 (98%)
Frame = +1
Query: 112 MREILHIQGGQCGNQIGAKFWEVVCAEHGIDHTGKYGGDSELQLERINVYYNEASCGRFV 291
MREILHIQGGQCGNQIGAKFWEVVCAEHGID TG+YGGDSELQLERINVYYNEASCGRFV
Sbjct: 1 MREILHIQGGQCGNQIGAKFWEVVCAEHGIDSTGRYGGDSELQLERINVYYNEASCGRFV 60
Query: 292 PRAVLMDLEPGTMDSVRSGPYGQIFRPDNFVFGQSGAGNNWAKGHYTEGAELIDSVLDVV 471
PRAVLMDLEPGTMDSVRSGPYGQIFRPDNFVFGQSGAGNNWAKGHYTEGAELIDSVLDVV
Sbjct: 61 PRAVLMDLEPGTMDSVRSGPYGQIFRPDNFVFGQSGAGNNWAKGHYTEGAELIDSVLDVV 120
Query: 472 RKEAENCDCLQGFQVCHSLGGGTGSGMGTLLISKIREEYPDRMMLTFSVFPSPKVSDTVV 651
RKEAENCDCLQGFQVCHSLGGGTGSGMGTLLISKIREEYPDRMMLTFSVFPSPKVSDTVV
Sbjct: 121 RKEAENCDCLQGFQVCHSLGGGTGSGMGTLLISKIREEYPDRMMLTFSVFPSPKVSDTVV 180
Query: 652 EPYNATL 672
EPYNATL
Sbjct: 181 EPYNATL 187
>sp|P37392|TBB1_LUPAL TUBULIN BETA-1 CHAIN gi|486734|pir||S35142 tubulin beta chain -
white lupine gi|402636|emb|CAA49736.1| Beta tubulin 1
[Lupinus albus]
Length = 447
Score = 386 bits (992), Expect = e-106
Identities = 183/187 (97%), Positives = 186/187 (98%)
Frame = +1
Query: 112 MREILHIQGGQCGNQIGAKFWEVVCAEHGIDHTGKYGGDSELQLERINVYYNEASCGRFV 291
MREILHIQGGQCGNQIGAKFWEVVCAEHGID TG+YGGD+ELQLER+NVYYNEASCGRFV
Sbjct: 1 MREILHIQGGQCGNQIGAKFWEVVCAEHGIDSTGRYGGDNELQLERVNVYYNEASCGRFV 60
Query: 292 PRAVLMDLEPGTMDSVRSGPYGQIFRPDNFVFGQSGAGNNWAKGHYTEGAELIDSVLDVV 471
PRAVLMDLEPGTMDSVRSGPYGQIFRPDNFVFGQSGAGNNWAKGHYTEGAELIDSVLDVV
Sbjct: 61 PRAVLMDLEPGTMDSVRSGPYGQIFRPDNFVFGQSGAGNNWAKGHYTEGAELIDSVLDVV 120
Query: 472 RKEAENCDCLQGFQVCHSLGGGTGSGMGTLLISKIREEYPDRMMLTFSVFPSPKVSDTVV 651
RKEAENCDCLQGFQVCHSLGGGTGSGMGTLLISKIREEYPDRMMLTFSVFPSPKVSDTVV
Sbjct: 121 RKEAENCDCLQGFQVCHSLGGGTGSGMGTLLISKIREEYPDRMMLTFSVFPSPKVSDTVV 180
Query: 652 EPYNATL 672
EPYNATL
Sbjct: 181 EPYNATL 187
>pir||JA0049 Tubulin beta-2 chain - soybean
Length = 449
Score = 385 bits (989), Expect = e-106
Identities = 184/187 (98%), Positives = 185/187 (98%)
Frame = +1
Query: 112 MREILHIQGGQCGNQIGAKFWEVVCAEHGIDHTGKYGGDSELQLERINVYYNEASCGRFV 291
MRE LHIQGGQCGNQIGAKFWEVVCAEHGID TG+YGGDSELQLERINVYYNEASCGRFV
Sbjct: 1 MRESLHIQGGQCGNQIGAKFWEVVCAEHGIDPTGRYGGDSELQLERINVYYNEASCGRFV 60
Query: 292 PRAVLMDLEPGTMDSVRSGPYGQIFRPDNFVFGQSGAGNNWAKGHYTEGAELIDSVLDVV 471
PRAVLMDLEPGTMDSVRSGPYGQIFRPDNFVFGQSGAGNNWAKGHYTEGAELIDSVLDVV
Sbjct: 61 PRAVLMDLEPGTMDSVRSGPYGQIFRPDNFVFGQSGAGNNWAKGHYTEGAELIDSVLDVV 120
Query: 472 RKEAENCDCLQGFQVCHSLGGGTGSGMGTLLISKIREEYPDRMMLTFSVFPSPKVSDTVV 651
RKEAENCDCLQGFQVCHSLGGGTGSGMGTLLISKIREEYPDRMMLTFSVFPSPKVSDTVV
Sbjct: 121 RKEAENCDCLQGFQVCHSLGGGTGSGMGTLLISKIREEYPDRMMLTFSVFPSPKVSDTVV 180
Query: 652 EPYNATL 672
EPYNATL
Sbjct: 181 EPYNATL 187
>sp|P28551|TBB3_SOYBN TUBULIN BETA CHAIN gi|312989|emb|CAA42777.1| beta-tubulin [Glycine
max]
Length = 408
Score = 382 bits (980), Expect = e-105
Identities = 182/187 (97%), Positives = 184/187 (98%)
Frame = +1
Query: 112 MREILHIQGGQCGNQIGAKFWEVVCAEHGIDHTGKYGGDSELQLERINVYYNEASCGRFV 291
MREILHIQGGQCGNQIGAKFWEV+C EHGIDHTGKY GDSELQLERINVYYNEAS GR+V
Sbjct: 1 MREILHIQGGQCGNQIGAKFWEVICDEHGIDHTGKYSGDSELQLERINVYYNEASGGRYV 60
Query: 292 PRAVLMDLEPGTMDSVRSGPYGQIFRPDNFVFGQSGAGNNWAKGHYTEGAELIDSVLDVV 471
PRAVLMDLEPGTMDSVRSGPYGQIFRPDNFVFGQSGAGNNWAKGHYTEGAELIDSVLDVV
Sbjct: 61 PRAVLMDLEPGTMDSVRSGPYGQIFRPDNFVFGQSGAGNNWAKGHYTEGAELIDSVLDVV 120
Query: 472 RKEAENCDCLQGFQVCHSLGGGTGSGMGTLLISKIREEYPDRMMLTFSVFPSPKVSDTVV 651
RKEAENCDCLQGFQVCHSLGGGTGSGMGTLLISKIREEYPDRMMLTFSVFPSPKVSDTVV
Sbjct: 121 RKEAENCDCLQGFQVCHSLGGGTGSGMGTLLISKIREEYPDRMMLTFSVFPSPKVSDTVV 180
Query: 652 EPYNATL 672
EPYNATL
Sbjct: 181 EPYNATL 187
>sp|P12460|TBB2_SOYBN TUBULIN BETA-2 CHAIN gi|170062|gb|AAA34010.1| S-beta-1 tubulin
Length = 449
Score = 382 bits (980), Expect = e-105
Identities = 183/187 (97%), Positives = 184/187 (97%)
Frame = +1
Query: 112 MREILHIQGGQCGNQIGAKFWEVVCAEHGIDHTGKYGGDSELQLERINVYYNEASCGRFV 291
MRE LHIQGGQCGNQIGAKFWEVVCAEHGID TG+YGGDSELQLERINVYYNEASCGRFV
Sbjct: 1 MRESLHIQGGQCGNQIGAKFWEVVCAEHGIDPTGRYGGDSELQLERINVYYNEASCGRFV 60
Query: 292 PRAVLMDLEPGTMDSVRSGPYGQIFRPDNFVFGQSGAGNNWAKGHYTEGAELIDSVLDVV 471
RAVLMDLEPGTMDSVRSGPYGQIFRPDNFVFGQSGAGNNWAKGHYTEGAELIDSVLDVV
Sbjct: 61 RRAVLMDLEPGTMDSVRSGPYGQIFRPDNFVFGQSGAGNNWAKGHYTEGAELIDSVLDVV 120
Query: 472 RKEAENCDCLQGFQVCHSLGGGTGSGMGTLLISKIREEYPDRMMLTFSVFPSPKVSDTVV 651
RKEAENCDCLQGFQVCHSLGGGTGSGMGTLLISKIREEYPDRMMLTFSVFPSPKVSDTVV
Sbjct: 121 RKEAENCDCLQGFQVCHSLGGGTGSGMGTLLISKIREEYPDRMMLTFSVFPSPKVSDTVV 180
Query: 652 EPYNATL 672
EPYNATL
Sbjct: 181 EPYNATL 187
Database: nr
Posted date: Apr 1, 2003 2:05 AM
Number of letters in database: 448,689,247
Number of sequences in database: 1,393,205
Lambda K H
0.318 0.135 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 672,954,554
Number of Sequences: 1393205
Number of extensions: 16479385
Number of successful extensions: 90043
Number of sequences better than 10.0: 1818
Number of HSP's better than 10.0 without gapping: 76395
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 87335
length of database: 448,689,247
effective HSP length: 119
effective length of database: 282,897,852
effective search space used: 29704274460
frameshift window, decay const: 50, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
