Nr search
BLASTX 2.2.2 [Dec-14-2001]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= KMC005347A_C01 KMC005347A_c01
(536 letters)
Database: nr
1,393,205 sequences; 448,689,247 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
pir||C86176 hypothetical protein [imported] - Arabidopsis thalia... 58 1e-15
ref|NP_171937.1| hypothetical protein; protein id: At1g04420.1, ... 58 1e-15
ref|ZP_00029264.1| hypothetical protein [Burkholderia fungorum] 38 2e-05
ref|NP_422456.1| oxidoreductase, aldo/keto reductase family [Cau... 42 2e-04
ref|ZP_00073607.1| hypothetical protein [Trichodesmium erythraeu... 30 0.008
>pir||C86176 hypothetical protein [imported] - Arabidopsis thaliana
gi|2341033|gb|AAB70433.1| Similar to Babesia aldo-keto
reductase (gb|M93122). [Arabidopsis thaliana]
Length = 453
Score = 58.2 bits (139), Expect(2) = 1e-15
Identities = 29/47 (61%), Positives = 34/47 (71%)
Frame = -2
Query: 379 LSLRLDSQDDRPFTTSSIVGATSLDQLKEDIDAFTTTQRPLPAEVMA 239
+ L L DRPF TS+I+GATS+ QLKEDIDAF T+RP EVMA
Sbjct: 392 VELALGFVRDRPFVTSTIIGATSVKQLKEDIDAFLMTERPFSQEVMA 438
Score = 46.2 bits (108), Expect(2) = 1e-15
Identities = 21/31 (67%), Positives = 23/31 (73%)
Frame = -3
Query: 534 LSGKYIDIDFESAKTGRLNLFPGYMERYNQS 442
LSGKY+ D E+ K RLNLFPGYMERY S
Sbjct: 341 LSGKYLATDQEATKNARLNLFPGYMERYKGS 371
Score = 45.8 bits (107), Expect = 3e-04
Identities = 23/34 (67%), Positives = 30/34 (87%), Gaps = 1/34 (2%)
Frame = -1
Query: 440 VSREATIKYLEVAKKHGLTLVELALGFAR-RPSI 342
+++EATI+Y+EVAKK+GLT VELALGF R RP +
Sbjct: 372 LAKEATIQYVEVAKKYGLTPVELALGFVRDRPFV 405
>ref|NP_171937.1| hypothetical protein; protein id: At1g04420.1, supported by cDNA:
gi_17529151 [Arabidopsis thaliana]
gi|17529152|gb|AAL38802.1| unknown protein [Arabidopsis
thaliana] gi|21689703|gb|AAM67473.1| unknown protein
[Arabidopsis thaliana]
Length = 412
Score = 58.2 bits (139), Expect(2) = 1e-15
Identities = 29/47 (61%), Positives = 34/47 (71%)
Frame = -2
Query: 379 LSLRLDSQDDRPFTTSSIVGATSLDQLKEDIDAFTTTQRPLPAEVMA 239
+ L L DRPF TS+I+GATS+ QLKEDIDAF T+RP EVMA
Sbjct: 351 VELALGFVRDRPFVTSTIIGATSVKQLKEDIDAFLMTERPFSQEVMA 397
Score = 46.2 bits (108), Expect(2) = 1e-15
Identities = 21/31 (67%), Positives = 23/31 (73%)
Frame = -3
Query: 534 LSGKYIDIDFESAKTGRLNLFPGYMERYNQS 442
LSGKY+ D E+ K RLNLFPGYMERY S
Sbjct: 300 LSGKYLATDQEATKNARLNLFPGYMERYKGS 330
Score = 45.8 bits (107), Expect = 3e-04
Identities = 23/34 (67%), Positives = 30/34 (87%), Gaps = 1/34 (2%)
Frame = -1
Query: 440 VSREATIKYLEVAKKHGLTLVELALGFAR-RPSI 342
+++EATI+Y+EVAKK+GLT VELALGF R RP +
Sbjct: 331 LAKEATIQYVEVAKKYGLTPVELALGFVRDRPFV 364
>ref|ZP_00029264.1| hypothetical protein [Burkholderia fungorum]
Length = 428
Score = 38.1 bits (87), Expect(2) = 2e-05
Identities = 16/23 (69%), Positives = 21/23 (90%)
Frame = -2
Query: 355 DDRPFTTSSIVGATSLDQLKEDI 287
+ RPF TS+++GATSLDQLKE+I
Sbjct: 379 NSRPFVTSNLIGATSLDQLKENI 401
Score = 31.2 bits (69), Expect(2) = 2e-05
Identities = 14/31 (45%), Positives = 21/31 (67%), Gaps = 1/31 (3%)
Frame = -1
Query: 431 EATIKYLEVAKKHGLTLVELALGFAR-RPSI 342
+AT +Y+E+AK+HGL + AL F RP +
Sbjct: 354 QATTRYVELAKRHGLAPAQFALAFVNSRPFV 384
>ref|NP_422456.1| oxidoreductase, aldo/keto reductase family [Caulobacter crescentus
CB15] gi|25316267|pir||D87703 oxidoreductase, aldo/keto
reductase family CC3662 [imported] - Caulobacter
crescentus gi|13425420|gb|AAK25624.1| oxidoreductase,
aldo/keto reductase family [Caulobacter crescentus CB15]
Length = 401
Score = 41.6 bits (96), Expect(2) = 2e-04
Identities = 20/32 (62%), Positives = 25/32 (77%)
Frame = -2
Query: 373 LRLDSQDDRPFTTSSIVGATSLDQLKEDIDAF 278
L L D RPF T++I+GATS+DQLK +IDAF
Sbjct: 346 LALKFCDARPFVTATIIGATSMDQLKINIDAF 377
Score = 24.6 bits (52), Expect(2) = 2e-04
Identities = 11/24 (45%), Positives = 16/24 (65%)
Frame = -1
Query: 431 EATIKYLEVAKKHGLTLVELALGF 360
EA Y+++A+ HGL +LAL F
Sbjct: 327 EAFRNYVDLARAHGLDPAQLALKF 350
>ref|ZP_00073607.1| hypothetical protein [Trichodesmium erythraeum IMS101]
Length = 345
Score = 30.0 bits (66), Expect(3) = 0.008
Identities = 14/31 (45%), Positives = 22/31 (70%)
Frame = -2
Query: 373 LRLDSQDDRPFTTSSIVGATSLDQLKEDIDA 281
L L + R F S+I+GAT+++QLKE+I +
Sbjct: 290 LALAYVNSRWFVASTIIGATTMEQLKENISS 320
Score = 25.0 bits (53), Expect(3) = 0.008
Identities = 10/24 (41%), Positives = 16/24 (66%)
Frame = -1
Query: 431 EATIKYLEVAKKHGLTLVELALGF 360
EA Y+E+A K+ +T +LAL +
Sbjct: 271 EAIKSYIEIANKNNMTPAQLALAY 294
Score = 23.9 bits (50), Expect(3) = 0.008
Identities = 12/33 (36%), Positives = 21/33 (63%)
Frame = -3
Query: 534 LSGKYIDIDFESAKTGRLNLFPGYMERYNQSRV 436
L+GKY+ E++ RL FPG+ +RY ++ +
Sbjct: 240 LTGKYLQGVPENS---RLAFFPGFDQRYRKTNL 269
Database: nr
Posted date: Apr 1, 2003 2:05 AM
Number of letters in database: 448,689,247
Number of sequences in database: 1,393,205
Lambda K H
0.318 0.135 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 454,827,809
Number of Sequences: 1393205
Number of extensions: 9350266
Number of successful extensions: 20176
Number of sequences better than 10.0: 30
Number of HSP's better than 10.0 without gapping: 19830
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 20175
length of database: 448,689,247
effective HSP length: 115
effective length of database: 288,470,672
effective search space used: 18173652336
frameshift window, decay const: 50, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
