Nr search
BLASTX 2.2.2 [Dec-14-2001]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= KMC005346A_C01 KMC005346A_c01
(466 letters)
Database: nr
1,393,205 sequences; 448,689,247 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
dbj|BAB86230.1| hypothetical protein~similar to Arabidopsis thal... 35 0.51
ref|NP_175097.1| hypothetical protein; protein id: At1g44760.1, ... 33 1.5
pir||T07961 myosin heavy chain - Chlamydomonas reinhardtii gi|33... 32 3.3
ref|ZP_00126163.1| hypothetical protein [Pseudomonas syringae pv... 31 5.6
gb|EAA40846.1| GLP_154_39979_41331 [Giardia lamblia ATCC 50803] 31 5.6
>dbj|BAB86230.1| hypothetical protein~similar to Arabidopsis thaliana chromosome 1,
At1g44760 [Oryza sativa (japonica cultivar-group)]
gi|20804761|dbj|BAB92446.1| P0698A10.16 [Oryza sativa
(japonica cultivar-group)]
Length = 241
Score = 34.7 bits (78), Expect = 0.51
Identities = 14/23 (60%), Positives = 17/23 (73%)
Frame = -2
Query: 252 REAKAPMRYFISTSWQKNFWLLA 184
+++K Y IST WQKNFWLLA
Sbjct: 219 KQSKGVGGYLISTRWQKNFWLLA 241
>ref|NP_175097.1| hypothetical protein; protein id: At1g44760.1, supported by cDNA:
gi_17380775 [Arabidopsis thaliana]
gi|25405162|pir||E96506 hypothetical protein T12C22.3
[imported] - Arabidopsis thaliana
gi|8655986|gb|AAF78259.1|AC020576_3 Contains similarity
to hypothetical protein F19B11.17 gi|4406763 from
Arabidopsis thaliana BAC F19B11 gb|AC006836
gi|17380776|gb|AAL36218.1| unknown protein [Arabidopsis
thaliana]
Length = 213
Score = 33.1 bits (74), Expect = 1.5
Identities = 13/23 (56%), Positives = 16/23 (69%)
Frame = -2
Query: 252 REAKAPMRYFISTSWQKNFWLLA 184
++ K Y I+T WQKNFWLLA
Sbjct: 191 KQCKGVGGYLINTRWQKNFWLLA 213
>pir||T07961 myosin heavy chain - Chlamydomonas reinhardtii
gi|3342148|gb|AAC27525.1| myosin heavy chain
[Chlamydomonas reinhardtii]
Length = 1643
Score = 32.0 bits (71), Expect = 3.3
Identities = 20/76 (26%), Positives = 29/76 (37%), Gaps = 11/76 (14%)
Frame = +1
Query: 88 LKYEGEFPPFIPTIFPL*DPN*-----------VEATKLQTNLSQKPEVLLPASADKVAH 234
L ++ + F+ IFP+ N + K + +P PA ADK A
Sbjct: 1355 LLFKQQLDAFVQKIFPMIRDNVRREISPMLSNCIHTPKQHGRTAARPGAAAPAGADKAAA 1414
Query: 235 GCLGLSSSLQWSSTLH 282
G G S W+ LH
Sbjct: 1415 GAAGQQSHKSWTDILH 1430
>ref|ZP_00126163.1| hypothetical protein [Pseudomonas syringae pv. syringae B728a]
Length = 518
Score = 31.2 bits (69), Expect = 5.6
Identities = 14/40 (35%), Positives = 20/40 (50%)
Frame = +2
Query: 239 ALASLPHSNGQALCIMECNAPQTPLGCWWLVPQSTVKNND 358
A A + + G I++CNAPQ + W + Q NND
Sbjct: 429 AAAKIAEATGAPFLILDCNAPQAVIAAW--LAQRQTDNND 466
>gb|EAA40846.1| GLP_154_39979_41331 [Giardia lamblia ATCC 50803]
Length = 450
Score = 31.2 bits (69), Expect = 5.6
Identities = 11/32 (34%), Positives = 18/32 (55%)
Frame = -1
Query: 334 WNQPPAAQRSLWSIALHNAECLTIGVRKRGQG 239
W +P A Q+ + ++ HN C +GV + G G
Sbjct: 21 WLEPTAIQKEMLTVVSHNKACDVVGVAETGSG 52
Database: nr
Posted date: Apr 1, 2003 2:05 AM
Number of letters in database: 448,689,247
Number of sequences in database: 1,393,205
Lambda K H
0.318 0.135 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 398,608,369
Number of Sequences: 1393205
Number of extensions: 8124285
Number of successful extensions: 17580
Number of sequences better than 10.0: 13
Number of HSP's better than 10.0 without gapping: 17221
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 17559
length of database: 448,689,247
effective HSP length: 112
effective length of database: 292,650,287
effective search space used: 12291312054
frameshift window, decay const: 50, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
