Nr search
BLASTX 2.2.2 [Dec-14-2001]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= KMC005343A_C01 KMC005343A_c01
(702 letters)
Database: nr
1,393,205 sequences; 448,689,247 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
gb|AAM65301.1| indoleacetic acid (IAA)-inducible gene (IAA7) [Ar... 255 4e-67
ref|NP_188945.1| indoleacetic acid (IAA)-inducible gene (IAA7); ... 255 4e-67
pir||H71407 auxin-induced protein - Arabidopsis thaliana 253 1e-66
ref|NP_193191.2| IAA7 like protein; protein id: At4g14550.1, sup... 253 1e-66
pir||C85159 IAA7 like protein [imported] - Arabidopsis thaliana ... 253 1e-66
>gb|AAM65301.1| indoleacetic acid (IAA)-inducible gene (IAA7) [Arabidopsis
thaliana]
Length = 238
Score = 255 bits (652), Expect = 4e-67
Identities = 138/199 (69%), Positives = 158/199 (79%), Gaps = 12/199 (6%)
Frame = +3
Query: 141 LNLKETELCLGLPGGGGGGGGSDQVETPRSNG---KRGFSETVDLKLNLQSKEDLNDDVK 311
+NLK TELCLGLPGG ++ VE+P + KRGFSETVDL LNLQS ++ + D+K
Sbjct: 1 MNLKATELCLGLPGG------AEAVESPAKSAVGSKRGFSETVDLMLNLQSNKEGSVDLK 54
Query: 312 NVS---KEKTLLKDPAKPPAKAQVVGWPPVRSYRKNMMVQKVNN---EDQGTEKTTS--- 464
NVS KEKT LKDP+KPPAKAQVVGWPPVR+YRKNMM Q+ + E+ +EK +
Sbjct: 55 NVSAVPKEKTTLKDPSKPPAKAQVVGWPPVRNYRKNMMTQQKTSSGAEEASSEKAGNFGG 114
Query: 465 STAGGAFVKVSMDGAPYLRKVDLTMYKSYKELSDALAKMFSSFTMGNYGAQGMIDFMNES 644
AG VKVSMDGAPYLRKVDL MYKSY++LSDALAKMFSSFTMGNYGAQGMIDFMNES
Sbjct: 115 GAAGAGLVKVSMDGAPYLRKVDLKMYKSYQDLSDALAKMFSSFTMGNYGAQGMIDFMNES 174
Query: 645 KLMDLLNSSEYVPTYEDKD 701
KLM+LLNSSEYVP+YEDKD
Sbjct: 175 KLMNLLNSSEYVPSYEDKD 193
>ref|NP_188945.1| indoleacetic acid (IAA)-inducible gene (IAA7); protein id:
At3g23050.1, supported by cDNA: 38286., supported by
cDNA: gi_12083199, supported by cDNA: gi_15451141,
supported by cDNA: gi_18377419, supported by cDNA:
gi_972916 [Arabidopsis thaliana]
gi|11131304|sp|Q38825|AXI7_ARATH Auxin-responsive
protein IAA7 (Indoleacetic acid-induced protein 7)
gi|1363487|pir||S58494 auxin-induced protein IAA7 -
Arabidopsis thaliana gi|972917|gb|AAC49048.1| IAA7
gi|9294194|dbj|BAB02096.1| auxin-responsive protein IAA7
[Arabidopsis thaliana]
gi|12083200|gb|AAG48759.1|AF332395_1 indoleacetic
acid-inducible protein IAA7 [Arabidopsis thaliana]
gi|15451142|gb|AAK96842.1| auxin-responsive protein IAA7
[Arabidopsis thaliana] gi|18377420|gb|AAL66876.1|
auxin-responsive protein IAA7 [Arabidopsis thaliana]
Length = 243
Score = 255 bits (652), Expect = 4e-67
Identities = 138/199 (69%), Positives = 158/199 (79%), Gaps = 12/199 (6%)
Frame = +3
Query: 141 LNLKETELCLGLPGGGGGGGGSDQVETPRSNG---KRGFSETVDLKLNLQSKEDLNDDVK 311
+NLK TELCLGLPGG ++ VE+P + KRGFSETVDL LNLQS ++ + D+K
Sbjct: 6 MNLKATELCLGLPGG------AEAVESPAKSAVGSKRGFSETVDLMLNLQSNKEGSVDLK 59
Query: 312 NVS---KEKTLLKDPAKPPAKAQVVGWPPVRSYRKNMMVQKVNN---EDQGTEKTTS--- 464
NVS KEKT LKDP+KPPAKAQVVGWPPVR+YRKNMM Q+ + E+ +EK +
Sbjct: 60 NVSAVPKEKTTLKDPSKPPAKAQVVGWPPVRNYRKNMMTQQKTSSGAEEASSEKAGNFGG 119
Query: 465 STAGGAFVKVSMDGAPYLRKVDLTMYKSYKELSDALAKMFSSFTMGNYGAQGMIDFMNES 644
AG VKVSMDGAPYLRKVDL MYKSY++LSDALAKMFSSFTMGNYGAQGMIDFMNES
Sbjct: 120 GAAGAGLVKVSMDGAPYLRKVDLKMYKSYQDLSDALAKMFSSFTMGNYGAQGMIDFMNES 179
Query: 645 KLMDLLNSSEYVPTYEDKD 701
KLM+LLNSSEYVP+YEDKD
Sbjct: 180 KLMNLLNSSEYVPSYEDKD 198
>pir||H71407 auxin-induced protein - Arabidopsis thaliana
Length = 225
Score = 253 bits (647), Expect = 1e-66
Identities = 136/194 (70%), Positives = 154/194 (79%), Gaps = 7/194 (3%)
Frame = +3
Query: 141 LNLKETELCLGLPGGGGGGGGSDQVETPRSNG---KRGFSETVDLKLNLQSKEDLNDDVK 311
+NLKETELCLGLPGG ++ VE+P +G KRGFSETVDLKLNLQS + + D+
Sbjct: 1 MNLKETELCLGLPGG------TETVESPAKSGVGNKRGFSETVDLKLNLQSNKQGHVDLN 54
Query: 312 N--VSKEKTLLKDPAKPPAKAQVVGWPPVRSYRKNMMVQKVNNEDQGTEKTTSSTAGG-- 479
KEKT LKDP+KPPAKAQVVGWPPVR+YRKN+M N+ G + S+ GG
Sbjct: 55 TNGAPKEKTFLKDPSKPPAKAQVVGWPPVRNYRKNVMA----NQKSGEAEEAMSSGGGTV 110
Query: 480 AFVKVSMDGAPYLRKVDLTMYKSYKELSDALAKMFSSFTMGNYGAQGMIDFMNESKLMDL 659
AFVKVSMDGAPYLRKVDL MY SYK+LSDALAKMFSSFTMG+YGAQGMIDFMNESK+MDL
Sbjct: 111 AFVKVSMDGAPYLRKVDLKMYTSYKDLSDALAKMFSSFTMGSYGAQGMIDFMNESKVMDL 170
Query: 660 LNSSEYVPTYEDKD 701
LNSSEYVP+YEDKD
Sbjct: 171 LNSSEYVPSYEDKD 184
>ref|NP_193191.2| IAA7 like protein; protein id: At4g14550.1, supported by cDNA:
gi_12248008 [Arabidopsis thaliana]
gi|12248009|gb|AAG50096.1|AF334718_1 IAA14 [Arabidopsis
thaliana]
Length = 228
Score = 253 bits (647), Expect = 1e-66
Identities = 136/194 (70%), Positives = 154/194 (79%), Gaps = 7/194 (3%)
Frame = +3
Query: 141 LNLKETELCLGLPGGGGGGGGSDQVETPRSNG---KRGFSETVDLKLNLQSKEDLNDDVK 311
+NLKETELCLGLPGG ++ VE+P +G KRGFSETVDLKLNLQS + + D+
Sbjct: 1 MNLKETELCLGLPGG------TETVESPAKSGVGNKRGFSETVDLKLNLQSNKQGHVDLN 54
Query: 312 N--VSKEKTLLKDPAKPPAKAQVVGWPPVRSYRKNMMVQKVNNEDQGTEKTTSSTAGG-- 479
KEKT LKDP+KPPAKAQVVGWPPVR+YRKN+M N+ G + S+ GG
Sbjct: 55 TNGAPKEKTFLKDPSKPPAKAQVVGWPPVRNYRKNVMA----NQKSGEAEEAMSSGGGTV 110
Query: 480 AFVKVSMDGAPYLRKVDLTMYKSYKELSDALAKMFSSFTMGNYGAQGMIDFMNESKLMDL 659
AFVKVSMDGAPYLRKVDL MY SYK+LSDALAKMFSSFTMG+YGAQGMIDFMNESK+MDL
Sbjct: 111 AFVKVSMDGAPYLRKVDLKMYTSYKDLSDALAKMFSSFTMGSYGAQGMIDFMNESKVMDL 170
Query: 660 LNSSEYVPTYEDKD 701
LNSSEYVP+YEDKD
Sbjct: 171 LNSSEYVPSYEDKD 184
>pir||C85159 IAA7 like protein [imported] - Arabidopsis thaliana
gi|5302771|emb|CAB46059.1| IAA7 like protein
[Arabidopsis thaliana] gi|7268161|emb|CAB78497.1| IAA7
like protein [Arabidopsis thaliana]
Length = 234
Score = 253 bits (647), Expect = 1e-66
Identities = 136/194 (70%), Positives = 154/194 (79%), Gaps = 7/194 (3%)
Frame = +3
Query: 141 LNLKETELCLGLPGGGGGGGGSDQVETPRSNG---KRGFSETVDLKLNLQSKEDLNDDVK 311
+NLKETELCLGLPGG ++ VE+P +G KRGFSETVDLKLNLQS + + D+
Sbjct: 1 MNLKETELCLGLPGG------TETVESPAKSGVGNKRGFSETVDLKLNLQSNKQGHVDLN 54
Query: 312 N--VSKEKTLLKDPAKPPAKAQVVGWPPVRSYRKNMMVQKVNNEDQGTEKTTSSTAGG-- 479
KEKT LKDP+KPPAKAQVVGWPPVR+YRKN+M N+ G + S+ GG
Sbjct: 55 TNGAPKEKTFLKDPSKPPAKAQVVGWPPVRNYRKNVMA----NQKSGEAEEAMSSGGGTV 110
Query: 480 AFVKVSMDGAPYLRKVDLTMYKSYKELSDALAKMFSSFTMGNYGAQGMIDFMNESKLMDL 659
AFVKVSMDGAPYLRKVDL MY SYK+LSDALAKMFSSFTMG+YGAQGMIDFMNESK+MDL
Sbjct: 111 AFVKVSMDGAPYLRKVDLKMYTSYKDLSDALAKMFSSFTMGSYGAQGMIDFMNESKVMDL 170
Query: 660 LNSSEYVPTYEDKD 701
LNSSEYVP+YEDKD
Sbjct: 171 LNSSEYVPSYEDKD 184
Database: nr
Posted date: Apr 1, 2003 2:05 AM
Number of letters in database: 448,689,247
Number of sequences in database: 1,393,205
Lambda K H
0.318 0.135 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 658,779,432
Number of Sequences: 1393205
Number of extensions: 16385516
Number of successful extensions: 162611
Number of sequences better than 10.0: 330
Number of HSP's better than 10.0 without gapping: 71391
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 128063
length of database: 448,689,247
effective HSP length: 119
effective length of database: 282,897,852
effective search space used: 32250355128
frameshift window, decay const: 50, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
