Nr search
BLASTX 2.2.2 [Dec-14-2001]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= KMC005342A_C01 KMC005342A_c01
(633 letters)
Database: nr
1,393,205 sequences; 448,689,247 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
ref|NP_178536.1| putative GDSL-motif lipase/hydrolase; protein i... 112 5e-24
gb|AAM65485.1| putative GDSL-motif lipase/hydrolase [Arabidopsis... 112 5e-24
ref|NP_567758.1| putative APG protein; protein id: At4g26790.1, ... 108 4e-23
pir||T04802 hypothetical protein F10M23.130 - Arabidopsis thalia... 108 4e-23
ref|NP_181827.1| putative APG isolog protein; protein id: At2g42... 106 2e-22
>ref|NP_178536.1| putative GDSL-motif lipase/hydrolase; protein id: At2g04570.1,
supported by cDNA: 39762. [Arabidopsis thaliana]
gi|25336279|pir||A84459 probable GDSL-motif
lipase/hydrolase [imported] - Arabidopsis thaliana
gi|4587595|gb|AAD25823.1| putative GDSL-motif
lipase/hydrolase [Arabidopsis thaliana]
Length = 350
Score = 112 bits (279), Expect = 5e-24
Identities = 48/81 (59%), Positives = 58/81 (71%)
Frame = -3
Query: 631 FSNPYYIMMQIIRKPDLYGFESTSLACCATGMFEMGYACSRGSMFSCTDASKFVFWDSFH 452
FSNPY M+II+ P +GFE ACCATGMFEMGY C R + F+CT+A K+VFWDSFH
Sbjct: 269 FSNPYEPFMRIIKNPSSFGFEVVGAACCATGMFEMGYGCQRNNPFTCTNADKYVFWDSFH 328
Query: 451 PTEKTNGIVAKYVMQHVLSHF 389
PT+KTN I+A +M HF
Sbjct: 329 PTQKTNHIMANALMNSTFPHF 349
>gb|AAM65485.1| putative GDSL-motif lipase/hydrolase [Arabidopsis thaliana]
Length = 350
Score = 112 bits (279), Expect = 5e-24
Identities = 48/81 (59%), Positives = 58/81 (71%)
Frame = -3
Query: 631 FSNPYYIMMQIIRKPDLYGFESTSLACCATGMFEMGYACSRGSMFSCTDASKFVFWDSFH 452
FSNPY M+II+ P +GFE ACCATGMFEMGY C R + F+CT+A K+VFWDSFH
Sbjct: 269 FSNPYEPFMRIIKNPSSFGFEVVGAACCATGMFEMGYGCQRNNPFTCTNADKYVFWDSFH 328
Query: 451 PTEKTNGIVAKYVMQHVLSHF 389
PT+KTN I+A +M HF
Sbjct: 329 PTQKTNHIMANALMNSTFPHF 349
>ref|NP_567758.1| putative APG protein; protein id: At4g26790.1, supported by cDNA:
2574., supported by cDNA: gi_18252232 [Arabidopsis
thaliana] gi|18252233|gb|AAL61949.1| putative APG
protein [Arabidopsis thaliana]
gi|21387003|gb|AAM47905.1| putative APG protein
[Arabidopsis thaliana] gi|21554559|gb|AAM63613.1|
putative APG protein [Arabidopsis thaliana]
Length = 351
Score = 108 bits (271), Expect = 4e-23
Identities = 46/81 (56%), Positives = 62/81 (75%)
Frame = -3
Query: 631 FSNPYYIMMQIIRKPDLYGFESTSLACCATGMFEMGYACSRGSMFSCTDASKFVFWDSFH 452
FSNPY ++ +II P+ +GFE+ ACC TG +EM Y C + + F+C+DASK+VFWDSFH
Sbjct: 270 FSNPYDLVSEIIYHPEAFGFENVRSACCGTGYYEMSYLCDKMNPFTCSDASKYVFWDSFH 329
Query: 451 PTEKTNGIVAKYVMQHVLSHF 389
PTEKTN IVA +V+++ LS F
Sbjct: 330 PTEKTNAIVANHVLKYDLSRF 350
>pir||T04802 hypothetical protein F10M23.130 - Arabidopsis thaliana
gi|4455202|emb|CAB36525.1| putative APG protein
[Arabidopsis thaliana] gi|7269531|emb|CAB79534.1|
putative APG protein [Arabidopsis thaliana]
Length = 365
Score = 108 bits (271), Expect = 4e-23
Identities = 46/81 (56%), Positives = 62/81 (75%)
Frame = -3
Query: 631 FSNPYYIMMQIIRKPDLYGFESTSLACCATGMFEMGYACSRGSMFSCTDASKFVFWDSFH 452
FSNPY ++ +II P+ +GFE+ ACC TG +EM Y C + + F+C+DASK+VFWDSFH
Sbjct: 284 FSNPYDLVSEIIYHPEAFGFENVRSACCGTGYYEMSYLCDKMNPFTCSDASKYVFWDSFH 343
Query: 451 PTEKTNGIVAKYVMQHVLSHF 389
PTEKTN IVA +V+++ LS F
Sbjct: 344 PTEKTNAIVANHVLKYDLSRF 364
>ref|NP_181827.1| putative APG isolog protein; protein id: At2g42990.1 [Arabidopsis
thaliana] gi|25336313|pir||F84860 probable GDSL-motif
lipase/hydrolase [imported] - Arabidopsis thaliana
gi|4512657|gb|AAD21711.1| putative APG isolog protein
[Arabidopsis thaliana] gi|20197866|gb|AAM15290.1|
putative APG isolog protein [Arabidopsis thaliana]
Length = 303
Score = 106 bits (265), Expect = 2e-22
Identities = 44/81 (54%), Positives = 62/81 (76%)
Frame = -3
Query: 631 FSNPYYIMMQIIRKPDLYGFESTSLACCATGMFEMGYACSRGSMFSCTDASKFVFWDSFH 452
F+NPY IM I+ KP+LYG E +S ACC TG+FEMG+ C + + +C+DA+KFVFWD+FH
Sbjct: 222 FANPYDIMWDIVTKPNLYGLEISSSACCGTGLFEMGFLCGQDNPLTCSDANKFVFWDAFH 281
Query: 451 PTEKTNGIVAKYVMQHVLSHF 389
PTE+TN IV+ + +H+ + F
Sbjct: 282 PTERTNQIVSDHFFKHLKNLF 302
Database: nr
Posted date: Apr 1, 2003 2:05 AM
Number of letters in database: 448,689,247
Number of sequences in database: 1,393,205
Lambda K H
0.318 0.135 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 529,998,802
Number of Sequences: 1393205
Number of extensions: 11254436
Number of successful extensions: 25580
Number of sequences better than 10.0: 216
Number of HSP's better than 10.0 without gapping: 24161
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 25447
length of database: 448,689,247
effective HSP length: 118
effective length of database: 284,291,057
effective search space used: 26154777244
frameshift window, decay const: 50, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
