Nr search
BLASTX 2.2.2 [Dec-14-2001]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= KMC005341A_C01 KMC005341A_c01
(781 letters)
Database: nr
1,393,205 sequences; 448,689,247 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
ref|NP_175986.2| unknown protein; protein id: At1g55900.1, suppo... 191 4e-67
gb|AAF79316.1|AC002304_9 F14J16.15 [Arabidopsis thaliana] 185 3e-65
dbj|BAB92371.1| P0512C01.26 [Oryza sativa (japonica cultivar-gro... 175 7e-62
ref|NP_612023.1| CG12313-PA [Drosophila melanogaster] gi|7291953... 119 5e-26
gb|EAA01623.1| ebiP4167 [Anopheles gambiae str. PEST] 114 2e-24
>ref|NP_175986.2| unknown protein; protein id: At1g55900.1, supported by cDNA:
gi_18175980 [Arabidopsis thaliana]
gi|18175981|gb|AAL59962.1| unknown protein [Arabidopsis
thaliana] gi|21689895|gb|AAM67508.1| unknown protein
[Arabidopsis thaliana]
Length = 376
Score = 191 bits (486), Expect(2) = 4e-67
Identities = 90/139 (64%), Positives = 115/139 (81%)
Frame = +1
Query: 364 LIEEQVRSYTEPYTDKLLPD*LPQEQHVFTLVLDLNETLIHYIRTRDTGWQTFKRPGVDA 543
++EEQV+ +TEP ++KLLPD P EQHVFTLVLDLNETL++ R+ GW+TFKRPGVDA
Sbjct: 163 IVEEQVKGFTEPLSEKLLPDLHPAEQHVFTLVLDLNETLLYTDWKRERGWRTFKRPGVDA 222
Query: 544 FLEHLAQFYEIVVYTDEQNMFVDPVIERLDPKHCIRYRLSRPATKYQDGKHFRDLEKLNR 723
FLEHL +FYEIVVY+D+ M+V PV E+LDP IRY+L+R ATKY++GKH+RDL KLNR
Sbjct: 223 FLEHLGKFYEIVVYSDQMEMYVLPVCEKLDPNGYIRYKLARGATKYENGKHYRDLSKLNR 282
Query: 724 NPAKVLYLSGHA*ESCLQP 780
+P K+L++S +A ES LQP
Sbjct: 283 DPKKILFVSANAFESTLQP 301
Score = 86.3 bits (212), Expect(2) = 4e-67
Identities = 49/134 (36%), Positives = 72/134 (53%), Gaps = 14/134 (10%)
Frame = +3
Query: 3 AISPTRRAKYVASSPKRFLSTDAAAAASPPPPP-----------TAASPNRWNFLKYAVV 149
A S ++Y + + + +D PPPPP T +L YA++
Sbjct: 29 ASSTNSTSRYSGVTSTQSMFSDFPPPNQPPPPPPPQVEAAAAAATGKERKGLKYLGYALL 88
Query: 150 GAITGATTFAGYASYAYNLDEIEEKTRSFRESAKYT---AGDGATTLDKFQGLLYSTAMT 320
A+TGAT GYAS+AY +DE+ EKT++FRESA T G +DK+Q LYS AMT
Sbjct: 89 WALTGATAATGYASFAYTIDEVNEKTKAFRESATKTPVIKSSGIDVIDKYQTKLYSAAMT 148
Query: 321 VPAKAVELYVDARK 362
A+A++ Y++ R+
Sbjct: 149 GSARAIDKYLELRE 162
>gb|AAF79316.1|AC002304_9 F14J16.15 [Arabidopsis thaliana]
Length = 414
Score = 185 bits (470), Expect(2) = 3e-65
Identities = 90/144 (62%), Positives = 115/144 (79%), Gaps = 5/144 (3%)
Frame = +1
Query: 364 LIEEQVRSYTEPYTDKLLPD*LPQEQHVFTLVLDLNETLIHYIRTRDTGWQTFKRPGVDA 543
++EEQV+ +TEP ++KLLPD P EQHVFTLVLDLNETL++ R+ GW+TFKRPGVDA
Sbjct: 163 IVEEQVKGFTEPLSEKLLPDLHPAEQHVFTLVLDLNETLLYTDWKRERGWRTFKRPGVDA 222
Query: 544 FLEHLAQFYEIVVYTDEQNM-----FVDPVIERLDPKHCIRYRLSRPATKYQDGKHFRDL 708
FLEHL +FYEIVVY+D+ M +V PV E+LDP IRY+L+R ATKY++GKH+RDL
Sbjct: 223 FLEHLGKFYEIVVYSDQMEMVKSQLYVLPVCEKLDPNGYIRYKLARGATKYENGKHYRDL 282
Query: 709 EKLNRNPAKVLYLSGHA*ESCLQP 780
KLNR+P K+L++S +A ES LQP
Sbjct: 283 SKLNRDPKKILFVSANAFESTLQP 306
Score = 86.3 bits (212), Expect(2) = 3e-65
Identities = 49/134 (36%), Positives = 72/134 (53%), Gaps = 14/134 (10%)
Frame = +3
Query: 3 AISPTRRAKYVASSPKRFLSTDAAAAASPPPPP-----------TAASPNRWNFLKYAVV 149
A S ++Y + + + +D PPPPP T +L YA++
Sbjct: 29 ASSTNSTSRYSGVTSTQSMFSDFPPPNQPPPPPPPQVEAAAAAATGKERKGLKYLGYALL 88
Query: 150 GAITGATTFAGYASYAYNLDEIEEKTRSFRESAKYT---AGDGATTLDKFQGLLYSTAMT 320
A+TGAT GYAS+AY +DE+ EKT++FRESA T G +DK+Q LYS AMT
Sbjct: 89 WALTGATAATGYASFAYTIDEVNEKTKAFRESATKTPVIKSSGIDVIDKYQTKLYSAAMT 148
Query: 321 VPAKAVELYVDARK 362
A+A++ Y++ R+
Sbjct: 149 GSARAIDKYLELRE 162
>dbj|BAB92371.1| P0512C01.26 [Oryza sativa (japonica cultivar-group)]
Length = 262
Score = 175 bits (444), Expect(2) = 7e-62
Identities = 80/112 (71%), Positives = 100/112 (88%)
Frame = +1
Query: 367 IEEQVRSYTEPYTDKLLPD*LPQEQHVFTLVLDLNETLIHYIRTRDTGWQTFKRPGVDAF 546
IE+Q+R ++EP +DKLLPD LPQEQHVFTLVLDLNETL++ R+ GW+TFKRPGVDAF
Sbjct: 149 IEDQIRGFSEPSSDKLLPDLLPQEQHVFTLVLDLNETLVYSDWKRERGWRTFKRPGVDAF 208
Query: 547 LEHLAQFYEIVVYTDEQNMFVDPVIERLDPKHCIRYRLSRPATKYQDGKHFR 702
LEHL +FYEIVVY+D+ +M+VDPVIERLDPK C+++RLSR ATKY++GKH+R
Sbjct: 209 LEHLGKFYEIVVYSDQLSMYVDPVIERLDPKGCVQHRLSRVATKYENGKHYR 260
Score = 84.7 bits (208), Expect(2) = 7e-62
Identities = 49/122 (40%), Positives = 68/122 (55%), Gaps = 3/122 (2%)
Frame = +3
Query: 3 AISPTRRAKYVASSPKRFLSTDAAAAASPP---PPPTAASPNRWNFLKYAVVGAITGATT 173
A P A VA+S +TD +++A P PPP A P LK V+ + A
Sbjct: 28 ASEPAAAAAAVAASDAA-AATDYSSSAGDPSSAPPPPARKP--LGLLKGGVLAVVAAAFG 84
Query: 174 FAGYASYAYNLDEIEEKTRSFRESAKYTAGDGATTLDKFQGLLYSTAMTVPAKAVELYVD 353
GY SYAY+LDEI+++TR FR+++K D + +KFQ + YS AM VP A+E Y+D
Sbjct: 85 ATGYVSYAYSLDEIDQRTREFRKNSKQPIRDDLSGFEKFQAMAYSAAMKVPVAAIEFYLD 144
Query: 354 AR 359
R
Sbjct: 145 TR 146
>ref|NP_612023.1| CG12313-PA [Drosophila melanogaster] gi|7291953|gb|AAF47370.1|
CG12313-PA [Drosophila melanogaster]
Length = 409
Score = 119 bits (298), Expect = 5e-26
Identities = 61/142 (42%), Positives = 88/142 (61%), Gaps = 2/142 (1%)
Frame = +1
Query: 322 CLLKQ*SFMWMQGRLIEEQVRSYTEPYTDKLLPD*L--PQEQHVFTLVLDLNETLIHYIR 495
CL + MW + + R + EP KLLPD L P Q +TLVL++ + L+H
Sbjct: 166 CLPQMQQLMWRTWKSVNRFQRFFKEPSRKKLLPDPLQPPYVQPPYTLVLEIKDVLVHPDW 225
Query: 496 TRDTGWQTFKRPGVDAFLEHLAQFYEIVVYTDEQNMFVDPVIERLDPKHCIRYRLSRPAT 675
T +TGW+ KRPGVD FL+ A+++EIVVYT EQ + V P+++ LDP CI YRL R +T
Sbjct: 226 TYETGWRFKKRPGVDVFLKECAKYFEIVVYTAEQGVTVFPLVDALDPNGCIMYRLVRDST 285
Query: 676 KYQDGKHFRDLEKLNRNPAKVL 741
+ G H ++L+ LNR+ +V+
Sbjct: 286 HFDGGHHVKNLDNLNRDLKRVV 307
>gb|EAA01623.1| ebiP4167 [Anopheles gambiae str. PEST]
Length = 337
Score = 114 bits (285), Expect = 2e-24
Identities = 64/147 (43%), Positives = 90/147 (60%), Gaps = 2/147 (1%)
Frame = +1
Query: 346 MWMQGRLIEEQVRSYTEPYTDKLLPD*L--PQEQHVFTLVLDLNETLIHYIRTRDTGWQT 519
MW ++ ++ EP +KLLPD L P Q +TLVL++ + L+H T TGW+
Sbjct: 106 MWKSMTYYQKMIQ---EPSREKLLPDPLKYPYVQPPYTLVLEMKDVLVHPDWTYQTGWRF 162
Query: 520 FKRPGVDAFLEHLAQFYEIVVYTDEQNMFVDPVIERLDPKHCIRYRLSRPATKYQDGKHF 699
KRPGVD FLE LA YEIVV+T +Q M V P+++ LDP+ I YRL R AT + DG H
Sbjct: 163 KKRPGVDKFLETLAANYEIVVFTADQGMTVFPILDALDPRGYIMYRLVRDATHFVDGHHV 222
Query: 700 RDLEKLNRNPAKVLYLSGHA*ESCLQP 780
++L+ LNR+ +KV+ + + L P
Sbjct: 223 KNLDNLNRDLSKVIVVDWDPNSTKLHP 249
Database: nr
Posted date: Apr 1, 2003 2:05 AM
Number of letters in database: 448,689,247
Number of sequences in database: 1,393,205
Lambda K H
0.318 0.135 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 657,249,262
Number of Sequences: 1393205
Number of extensions: 15568234
Number of successful extensions: 126310
Number of sequences better than 10.0: 457
Number of HSP's better than 10.0 without gapping: 75330
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 112892
length of database: 448,689,247
effective HSP length: 121
effective length of database: 280,111,442
effective search space used: 38655378996
frameshift window, decay const: 50, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
