Nr search
BLASTX 2.2.2 [Dec-14-2001]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= KMC005339A_C01 KMC005339A_c01
(704 letters)
Database: nr
1,393,205 sequences; 448,689,247 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
gb|AAK13159.1|AC078829_11 unknown protein [Oryza sativa (japonic... 294 7e-79
ref|NP_563693.1| Expressed protein; protein id: At1g03900.1, sup... 290 2e-77
gb|AAK68815.1| Unknown protein [Arabidopsis thaliana] gi|1837752... 290 2e-77
pir||G86169 hypothetical protein [imported] - Arabidopsis thalia... 277 9e-74
ref|XP_216564.1| similar to RIKEN cDNA 1110005F07 [Mus musculus]... 145 7e-34
>gb|AAK13159.1|AC078829_11 unknown protein [Oryza sativa (japonica cultivar-group)]
gi|16905180|gb|AAL31050.1|AC078893_13 unknown protein
[Oryza sativa]
Length = 287
Score = 294 bits (753), Expect = 7e-79
Identities = 142/174 (81%), Positives = 156/174 (89%), Gaps = 5/174 (2%)
Frame = +1
Query: 196 EEDESFEHTLLVVREVSVYKIPPRTTSGGYKCGEWLQSDKIWTGRIRVVSRRDRCEIRLE 375
EE+E+FEHTLLVVREVSVYKIPPRTTSGGYKCGEWLQSD+IW+GR+RVVS DRCEIRLE
Sbjct: 7 EEEEAFEHTLLVVREVSVYKIPPRTTSGGYKCGEWLQSDRIWSGRLRVVSCGDRCEIRLE 66
Query: 376 DPASGDLFGACFVYPGQREGSVEPVLDSSRYFVLKIEDGQGKHAFIGLGFNERNEAFDFN 555
DPASGDLF ACFV PGQRE +VE VLDSSRYFVL+IEDG+GKHAF+GLGF ERNEAFDFN
Sbjct: 67 DPASGDLFAACFVLPGQREAAVETVLDSSRYFVLRIEDGRGKHAFVGLGFGERNEAFDFN 126
Query: 556 VALSDHEKYVRREHDKE-----SGNADAAEDSQIDIHPAVNHRLKEGETIRINV 702
VALSDHEKYV+REH+KE +G + +D QIDIHPAVN RLKEGETIRINV
Sbjct: 127 VALSDHEKYVKREHEKEAADGGAGGGEENDDGQIDIHPAVNRRLKEGETIRINV 180
>ref|NP_563693.1| Expressed protein; protein id: At1g03900.1, supported by cDNA:
gi_14596174, supported by cDNA: gi_18377527 [Arabidopsis
thaliana]
Length = 272
Score = 290 bits (741), Expect = 2e-77
Identities = 141/170 (82%), Positives = 155/170 (90%)
Frame = +1
Query: 193 EEEDESFEHTLLVVREVSVYKIPPRTTSGGYKCGEWLQSDKIWTGRIRVVSRRDRCEIRL 372
EEE+E+FEHTLLVVREVSVYKIPPRTTSGGYKCGEWLQSDKIW+GR+RVVS +DRCEIRL
Sbjct: 6 EEEEETFEHTLLVVREVSVYKIPPRTTSGGYKCGEWLQSDKIWSGRLRVVSCKDRCEIRL 65
Query: 373 EDPASGDLFGACFVYPGQREGSVEPVLDSSRYFVLKIEDGQGKHAFIGLGFNERNEAFDF 552
ED SGDLF ACFV PG+RE SVEP LDSSRYFVL+I+DG+GK+AFIGLGF ERNEAFDF
Sbjct: 66 EDSNSGDLFAACFVDPGRRENSVEPSLDSSRYFVLRIDDGRGKYAFIGLGFAERNEAFDF 125
Query: 553 NVALSDHEKYVRREHDKESGNADAAEDSQIDIHPAVNHRLKEGETIRINV 702
NVALSDHEKYVRRE +KE+G + D+ IDIHPAVNHRLKEGETIRINV
Sbjct: 126 NVALSDHEKYVRREKEKETGET-SESDNHIDIHPAVNHRLKEGETIRINV 174
>gb|AAK68815.1| Unknown protein [Arabidopsis thaliana] gi|18377528|gb|AAL66930.1|
unknown protein [Arabidopsis thaliana]
Length = 276
Score = 290 bits (741), Expect = 2e-77
Identities = 141/170 (82%), Positives = 155/170 (90%)
Frame = +1
Query: 193 EEEDESFEHTLLVVREVSVYKIPPRTTSGGYKCGEWLQSDKIWTGRIRVVSRRDRCEIRL 372
EEE+E+FEHTLLVVREVSVYKIPPRTTSGGYKCGEWLQSDKIW+GR+RVVS +DRCEIRL
Sbjct: 6 EEEEETFEHTLLVVREVSVYKIPPRTTSGGYKCGEWLQSDKIWSGRLRVVSCKDRCEIRL 65
Query: 373 EDPASGDLFGACFVYPGQREGSVEPVLDSSRYFVLKIEDGQGKHAFIGLGFNERNEAFDF 552
ED SGDLF ACFV PG+RE SVEP LDSSRYFVL+I+DG+GK+AFIGLGF ERNEAFDF
Sbjct: 66 EDSNSGDLFAACFVDPGRRENSVEPSLDSSRYFVLRIDDGRGKYAFIGLGFAERNEAFDF 125
Query: 553 NVALSDHEKYVRREHDKESGNADAAEDSQIDIHPAVNHRLKEGETIRINV 702
NVALSDHEKYVRRE +KE+G + D+ IDIHPAVNHRLKEGETIRINV
Sbjct: 126 NVALSDHEKYVRREKEKETGET-SESDNHIDIHPAVNHRLKEGETIRINV 174
>pir||G86169 hypothetical protein [imported] - Arabidopsis thaliana
gi|4204313|gb|AAD10694.1| Hypothetical protein
[Arabidopsis thaliana]
Length = 580
Score = 277 bits (709), Expect = 9e-74
Identities = 141/191 (73%), Positives = 155/191 (80%), Gaps = 21/191 (10%)
Frame = +1
Query: 193 EEEDESFEHTLLVVREVSVYKIPPRTTSGGYKCGEWLQSDKIWTGRIRVVSRRDRCEIRL 372
EEE+E+FEHTLLVVREVSVYKIPPRTTSGGYKCGEWLQSDKIW+GR+RVVS +DRCEIRL
Sbjct: 6 EEEEETFEHTLLVVREVSVYKIPPRTTSGGYKCGEWLQSDKIWSGRLRVVSCKDRCEIRL 65
Query: 373 EDPASGDLFGACFVYPGQREGSVEPVLDSSRYFVLKIEDGQGKHAFIGLGFNERNEAFDF 552
ED SGDLF ACFV PG+RE SVEP LDSSRYFVL+I+DG+GK+AFIGLGF ERNEAFDF
Sbjct: 66 EDSNSGDLFAACFVDPGRRENSVEPSLDSSRYFVLRIDDGRGKYAFIGLGFAERNEAFDF 125
Query: 553 NVALSDHEKYVRREHDKESGNADAAEDSQIDIHPAVNHRL-------------------- 672
NVALSDHEKYVRRE +KE+G + D+ IDIHPAVNHRL
Sbjct: 126 NVALSDHEKYVRREKEKETGET-SESDNHIDIHPAVNHRLKENSWHLDLVEPEKIVVLMG 184
Query: 673 -KEGETIRINV 702
KEGETIRINV
Sbjct: 185 FKEGETIRINV 195
>ref|XP_216564.1| similar to RIKEN cDNA 1110005F07 [Mus musculus] [Rattus norvegicus]
Length = 263
Score = 145 bits (365), Expect = 7e-34
Identities = 78/172 (45%), Positives = 108/172 (62%), Gaps = 4/172 (2%)
Frame = +1
Query: 199 EDESFEHTLLVVREVSVYKIPPRTTSGGYKCGEWLQSDKIWTGRIRVVSRRDRCEIRLED 378
E+ +E L V EV VY+IPPR T+ GY+ EW W+GR+R+ ++ I+LED
Sbjct: 2 EESEYESVLCVKPEVHVYRIPPRATNRGYRASEWQLDQPSWSGRLRITAKGKVAYIKLED 61
Query: 379 PASGDLFGACFV--YPGQREGSVEPVLDSSRYFVLKIEDGQGKHAFIGLGFNERNEAFDF 552
SG+LF V +PG +VE V DSSRYFV++IEDG G+ AFIG+GF +R +AFDF
Sbjct: 62 RTSGELFAQAPVDQFPGT---AVESVTDSSRYFVIRIEDGNGRRAFIGIGFGDRGDAFDF 118
Query: 553 NVALSDHEKYVRR--EHDKESGNADAAEDSQIDIHPAVNHRLKEGETIRINV 702
NVAL DH K+V++ E K++ N D P ++ KEG+TI+IN+
Sbjct: 119 NVALQDHFKWVKQQCEFAKQAQNPDEG--------PKLDLGFKEGQTIKINI 162
Database: nr
Posted date: Apr 1, 2003 2:05 AM
Number of letters in database: 448,689,247
Number of sequences in database: 1,393,205
Lambda K H
0.318 0.135 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 611,142,917
Number of Sequences: 1393205
Number of extensions: 14130728
Number of successful extensions: 99825
Number of sequences better than 10.0: 1525
Number of HSP's better than 10.0 without gapping: 72101
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 93920
length of database: 448,689,247
effective HSP length: 120
effective length of database: 281,504,647
effective search space used: 32091529758
frameshift window, decay const: 50, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
