Nr search
BLASTX 2.2.2 [Dec-14-2001]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= KMC005338A_C01 KMC005338A_c01
(581 letters)
Database: nr
1,393,205 sequences; 448,689,247 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
sp|Q05214|ACT1_TOBAC ACTIN gi|322751|pir||S31933 actin - common ... 171 3e-75
ref|NP_187818.1| actin 11 (ACT11); protein id: At3g12110.1 [Arab... 171 3e-75
ref|NP_190236.1| actin 12; protein id: At3g46520.1 [Arabidopsis ... 170 7e-75
ref|NP_200745.1| actin 4; protein id: At5g59370.1, supported by ... 170 7e-75
gb|AAM65657.1| actin 4 [Arabidopsis thaliana] 170 7e-75
>sp|Q05214|ACT1_TOBAC ACTIN gi|322751|pir||S31933 actin - common tobacco
gi|22609|emb|CAA45149.1| actin [Nicotiana tabacum]
Length = 377
Score = 171 bits (434), Expect(2) = 3e-75
Identities = 81/82 (98%), Positives = 82/82 (99%)
Frame = +2
Query: 143 MADGEDIQPLVCDNGTGMVKAGFAGDDAPRAVFPSIVGRPRHTGVMVGMGQKDAYVGDEA 322
MADGEDIQPLVCDNGTGMVKAGFAGDDAPRAVFPSIVGRPRHTGVMVGMGQKDAYVGDEA
Sbjct: 1 MADGEDIQPLVCDNGTGMVKAGFAGDDAPRAVFPSIVGRPRHTGVMVGMGQKDAYVGDEA 60
Query: 323 QSKRGILTLKYPIEHGIVSNWE 388
QSKRGILTLKYPIEHGIVSNW+
Sbjct: 61 QSKRGILTLKYPIEHGIVSNWD 82
Score = 132 bits (332), Expect(2) = 3e-75
Identities = 63/64 (98%), Positives = 63/64 (98%)
Frame = +3
Query: 390 DMEKIWHHTFYNELRVAPEEHPVLLTEAPLKPKANREKMTQIMFETFNTPAMYVAIQAVL 569
DMEKIWHHTFYNELRVAPEEHPVLLTEAPL PKANREKMTQIMFETFNTPAMYVAIQAVL
Sbjct: 83 DMEKIWHHTFYNELRVAPEEHPVLLTEAPLNPKANREKMTQIMFETFNTPAMYVAIQAVL 142
Query: 570 SLYA 581
SLYA
Sbjct: 143 SLYA 146
>ref|NP_187818.1| actin 11 (ACT11); protein id: At3g12110.1 [Arabidopsis thaliana]
gi|1703129|sp|P53496|ACTB_ARATH Actin 11
gi|2129522|pir||S68109 actin 11 - Arabidopsis thaliana
gi|1002533|gb|AAB39404.1| actin-11
gi|9294108|dbj|BAB01959.1| actin 11 [Arabidopsis
thaliana] gi|12322007|gb|AAG51045.1|AC069473_7 actin 11
(ACT11); 24016-22523 [Arabidopsis thaliana]
gi|21593328|gb|AAM65277.1| actin 11 (ACT11) [Arabidopsis
thaliana] gi|26451746|dbj|BAC42968.1| unknown protein
[Arabidopsis thaliana] gi|28973377|gb|AAO64013.1|
putative actin 11 (ACT11) [Arabidopsis thaliana]
Length = 377
Score = 171 bits (434), Expect(2) = 3e-75
Identities = 81/82 (98%), Positives = 82/82 (99%)
Frame = +2
Query: 143 MADGEDIQPLVCDNGTGMVKAGFAGDDAPRAVFPSIVGRPRHTGVMVGMGQKDAYVGDEA 322
MADGEDIQPLVCDNGTGMVKAGFAGDDAPRAVFPSIVGRPRHTGVMVGMGQKDAYVGDEA
Sbjct: 1 MADGEDIQPLVCDNGTGMVKAGFAGDDAPRAVFPSIVGRPRHTGVMVGMGQKDAYVGDEA 60
Query: 323 QSKRGILTLKYPIEHGIVSNWE 388
QSKRGILTLKYPIEHGIVSNW+
Sbjct: 61 QSKRGILTLKYPIEHGIVSNWD 82
Score = 132 bits (332), Expect(2) = 3e-75
Identities = 63/64 (98%), Positives = 63/64 (98%)
Frame = +3
Query: 390 DMEKIWHHTFYNELRVAPEEHPVLLTEAPLKPKANREKMTQIMFETFNTPAMYVAIQAVL 569
DMEKIWHHTFYNELRVAPEEHPVLLTEAPL PKANREKMTQIMFETFNTPAMYVAIQAVL
Sbjct: 83 DMEKIWHHTFYNELRVAPEEHPVLLTEAPLNPKANREKMTQIMFETFNTPAMYVAIQAVL 142
Query: 570 SLYA 581
SLYA
Sbjct: 143 SLYA 146
>ref|NP_190236.1| actin 12; protein id: At3g46520.1 [Arabidopsis thaliana]
gi|1703131|sp|P53497|ACTC_ARATH Actin 12
gi|2129523|pir||S68110 actin 12 - Arabidopsis thaliana
gi|1002535|gb|AAB39405.1| actin-12
gi|6523055|emb|CAB62322.1| actin 12 [Arabidopsis
thaliana] gi|28392923|gb|AAO41897.1| putative actin 12
[Arabidopsis thaliana] gi|28827524|gb|AAO50606.1|
putative actin 12 [Arabidopsis thaliana]
Length = 377
Score = 170 bits (431), Expect(2) = 7e-75
Identities = 80/82 (97%), Positives = 82/82 (99%)
Frame = +2
Query: 143 MADGEDIQPLVCDNGTGMVKAGFAGDDAPRAVFPSIVGRPRHTGVMVGMGQKDAYVGDEA 322
MADGEDIQPLVCDNGTGMVKAGFAGDDAPRAVFPSIVGRPRHTGVMVGMGQKDAYVGDEA
Sbjct: 1 MADGEDIQPLVCDNGTGMVKAGFAGDDAPRAVFPSIVGRPRHTGVMVGMGQKDAYVGDEA 60
Query: 323 QSKRGILTLKYPIEHGIVSNWE 388
QSKRGILTLKYPIEHGIV+NW+
Sbjct: 61 QSKRGILTLKYPIEHGIVNNWD 82
Score = 132 bits (332), Expect(2) = 7e-75
Identities = 63/64 (98%), Positives = 63/64 (98%)
Frame = +3
Query: 390 DMEKIWHHTFYNELRVAPEEHPVLLTEAPLKPKANREKMTQIMFETFNTPAMYVAIQAVL 569
DMEKIWHHTFYNELRVAPEEHPVLLTEAPL PKANREKMTQIMFETFNTPAMYVAIQAVL
Sbjct: 83 DMEKIWHHTFYNELRVAPEEHPVLLTEAPLNPKANREKMTQIMFETFNTPAMYVAIQAVL 142
Query: 570 SLYA 581
SLYA
Sbjct: 143 SLYA 146
>ref|NP_200745.1| actin 4; protein id: At5g59370.1, supported by cDNA: 41421.
[Arabidopsis thaliana] gi|1703119|sp|P53494|ACT4_ARATH
Actin 4 gi|2129527|pir||S68108 actin 4 - Arabidopsis
thaliana gi|1002531|gb|AAB39403.1| actin-4
gi|8885543|dbj|BAA97473.1| actin 4 [Arabidopsis
thaliana]
Length = 377
Score = 170 bits (431), Expect(2) = 7e-75
Identities = 80/82 (97%), Positives = 82/82 (99%)
Frame = +2
Query: 143 MADGEDIQPLVCDNGTGMVKAGFAGDDAPRAVFPSIVGRPRHTGVMVGMGQKDAYVGDEA 322
MADGEDIQPLVCDNGTGMVKAGFAGDDAPRAVFPSIVGRPRHTGVMVGMGQKDAYVGDEA
Sbjct: 1 MADGEDIQPLVCDNGTGMVKAGFAGDDAPRAVFPSIVGRPRHTGVMVGMGQKDAYVGDEA 60
Query: 323 QSKRGILTLKYPIEHGIVSNWE 388
QSKRGILTLKYPIEHGIV+NW+
Sbjct: 61 QSKRGILTLKYPIEHGIVNNWD 82
Score = 132 bits (332), Expect(2) = 7e-75
Identities = 63/64 (98%), Positives = 63/64 (98%)
Frame = +3
Query: 390 DMEKIWHHTFYNELRVAPEEHPVLLTEAPLKPKANREKMTQIMFETFNTPAMYVAIQAVL 569
DMEKIWHHTFYNELRVAPEEHPVLLTEAPL PKANREKMTQIMFETFNTPAMYVAIQAVL
Sbjct: 83 DMEKIWHHTFYNELRVAPEEHPVLLTEAPLNPKANREKMTQIMFETFNTPAMYVAIQAVL 142
Query: 570 SLYA 581
SLYA
Sbjct: 143 SLYA 146
>gb|AAM65657.1| actin 4 [Arabidopsis thaliana]
Length = 377
Score = 170 bits (431), Expect(2) = 7e-75
Identities = 80/82 (97%), Positives = 82/82 (99%)
Frame = +2
Query: 143 MADGEDIQPLVCDNGTGMVKAGFAGDDAPRAVFPSIVGRPRHTGVMVGMGQKDAYVGDEA 322
MADGEDIQPLVCDNGTGMVKAGFAGDDAPRAVFPSIVGRPRHTGVMVGMGQKDAYVGDEA
Sbjct: 1 MADGEDIQPLVCDNGTGMVKAGFAGDDAPRAVFPSIVGRPRHTGVMVGMGQKDAYVGDEA 60
Query: 323 QSKRGILTLKYPIEHGIVSNWE 388
QSKRGILTLKYPIEHGIV+NW+
Sbjct: 61 QSKRGILTLKYPIEHGIVNNWD 82
Score = 132 bits (332), Expect(2) = 7e-75
Identities = 63/64 (98%), Positives = 63/64 (98%)
Frame = +3
Query: 390 DMEKIWHHTFYNELRVAPEEHPVLLTEAPLKPKANREKMTQIMFETFNTPAMYVAIQAVL 569
DMEKIWHHTFYNELRVAPEEHPVLLTEAPL PKANREKMTQIMFETFNTPAMYVAIQAVL
Sbjct: 83 DMEKIWHHTFYNELRVAPEEHPVLLTEAPLNPKANREKMTQIMFETFNTPAMYVAIQAVL 142
Query: 570 SLYA 581
SLYA
Sbjct: 143 SLYA 146
Database: nr
Posted date: Apr 1, 2003 2:05 AM
Number of letters in database: 448,689,247
Number of sequences in database: 1,393,205
Lambda K H
0.318 0.135 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 618,894,722
Number of Sequences: 1393205
Number of extensions: 16605045
Number of successful extensions: 208745
Number of sequences better than 10.0: 2122
Number of HSP's better than 10.0 without gapping: 83264
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 156168
length of database: 448,689,247
effective HSP length: 117
effective length of database: 285,684,262
effective search space used: 21712003912
frameshift window, decay const: 50, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
