Nr search
BLASTX 2.2.2 [Dec-14-2001]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= KMC005335A_C01 KMC005335A_c01
(783 letters)
Database: nr
1,393,205 sequences; 448,689,247 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
ref|NP_177973.1| glycosyl hydrolase family 17; protein id: At1g7... 137 2e-31
dbj|BAB89448.1| beta-1,3-glucanase-like protein [Oryza sativa (j... 113 4e-24
ref|NP_181895.1| glycosyl hydrolase family 17; protein id: At2g4... 113 4e-24
dbj|BAB02616.1| beta-1,3-glucanase-like protein [Arabidopsis tha... 105 6e-22
gb|AAL73529.1|AF466200_8 putative beta-1,3-glucanase C terminal ... 105 7e-22
>ref|NP_177973.1| glycosyl hydrolase family 17; protein id: At1g78520.1 [Arabidopsis
thaliana]
Length = 114
Score = 137 bits (345), Expect = 2e-31
Identities = 61/101 (60%), Positives = 78/101 (76%), Gaps = 1/101 (0%)
Frame = -2
Query: 683 LLFLLFLSLTAAGNLMMVNGQ-KTWSVAKPSSDQATLLSNINYACAHVDCQIMQRGCPCS 507
L FL+FL L + N + VN + KTW VAKPSSDQ L NIN+AC+HVDC+++ GCPC
Sbjct: 8 LSFLIFLYLVSERNFINVNAETKTWCVAKPSSDQVALQDNINFACSHVDCRVLLSGCPCY 67
Query: 506 SPDRLINRASIAMNIYYQSKGRNHWNCDFRASGLVVVTDPS 384
SP LIN ASIAMN+YYQ+ GRN+WNC+F+ SGL+ +T+PS
Sbjct: 68 SPSNLINHASIAMNLYYQANGRNYWNCNFKNSGLITITNPS 108
>dbj|BAB89448.1| beta-1,3-glucanase-like protein [Oryza sativa (japonica
cultivar-group)] gi|21104533|dbj|BAB93128.1|
beta-1,3-glucanase-like protein [Oryza sativa (japonica
cultivar-group)]
Length = 115
Score = 113 bits (282), Expect = 4e-24
Identities = 48/99 (48%), Positives = 71/99 (71%)
Frame = -2
Query: 680 LFLLFLSLTAAGNLMMVNGQKTWSVAKPSSDQATLLSNINYACAHVDCQIMQRGCPCSSP 501
L L+ L ++ + + GQKTW VAKPS+D L +N+NYAC+ V+C ++Q+G PC +P
Sbjct: 16 LGLVLLYFSSGSTIRLAEGQKTWCVAKPSADDKVLTANLNYACSQVNCGVIQQGGPCFNP 75
Query: 500 DRLINRASIAMNIYYQSKGRNHWNCDFRASGLVVVTDPS 384
+ L++ A++AMN+YY + GRN WNC F+ S LVV +DPS
Sbjct: 76 NNLVSHAAVAMNLYYAAHGRNAWNCYFQNSALVVQSDPS 114
>ref|NP_181895.1| glycosyl hydrolase family 17; protein id: At2g43670.1 [Arabidopsis
thaliana] gi|25408893|pir||A84869 hypothetical protein
At2g43670 [imported] - Arabidopsis thaliana
gi|2281103|gb|AAB64039.1| putative beta-1,3-glucanase, C
terminal fragment [Arabidopsis thaliana]
Length = 120
Score = 113 bits (282), Expect = 4e-24
Identities = 52/104 (50%), Positives = 70/104 (67%), Gaps = 4/104 (3%)
Frame = -2
Query: 683 LLFLLFLSLTAAGNLMMVN----GQKTWSVAKPSSDQATLLSNINYACAHVDCQIMQRGC 516
L F++FL L GN + V W VAKPS+D L NIN+AC+ +DCQI+ G
Sbjct: 8 LCFIIFLYLWPEGNFIKVTKADRSAGDWCVAKPSTDNERLQENINFACSKIDCQIISEGG 67
Query: 515 PCSSPDRLINRASIAMNIYYQSKGRNHWNCDFRASGLVVVTDPS 384
C PD +I+RAS+AMN+YYQ++GR+ WNC+F SGL+ +TDPS
Sbjct: 68 ACYLPDSIISRASVAMNLYYQAQGRHFWNCNFEGSGLIGITDPS 111
>dbj|BAB02616.1| beta-1,3-glucanase-like protein [Arabidopsis thaliana]
Length = 154
Score = 105 bits (263), Expect = 6e-22
Identities = 50/103 (48%), Positives = 67/103 (64%), Gaps = 4/103 (3%)
Frame = -2
Query: 680 LFLLFLSLTAAGNLMM----VNGQKTWSVAKPSSDQATLLSNINYACAHVDCQIMQRGCP 513
L + L +GNL+ + GQ W VAKP + L++N+NYAC+ VDCQI+
Sbjct: 10 LSFIILLYIISGNLITECSYLQGQMQWCVAKPGTLTEQLINNLNYACSIVDCQIISTRGA 69
Query: 512 CSSPDRLINRASIAMNIYYQSKGRNHWNCDFRASGLVVVTDPS 384
C SPD + N AS+ MN+YYQ++GRN WNC+F SGLV +TDPS
Sbjct: 70 CYSPDNIYNMASVVMNLYYQAEGRNFWNCNFGDSGLVAITDPS 112
>gb|AAL73529.1|AF466200_8 putative beta-1,3-glucanase C terminal fragment [Sorghum bicolor]
Length = 121
Score = 105 bits (262), Expect = 7e-22
Identities = 56/122 (45%), Positives = 75/122 (60%), Gaps = 2/122 (1%)
Frame = -2
Query: 722 ASISMTTMAKLGALLFLLFLSLTAAGNLMMVNGQKTWSVAKPSSDQATLLSNINYACAHV 543
AS S+T +A AL + AA L + KTW VAKPS++ A L N+ +AC+
Sbjct: 2 ASPSVTFLAFFVALALSALHTDAAAETLR--HRSKTWCVAKPSAEDAALRGNLEFACSES 59
Query: 542 DCQIMQRGCPCSSPD--RLINRASIAMNIYYQSKGRNHWNCDFRASGLVVVTDPSYGNCI 369
DC +Q C+ PD L++RAS+AMN YYQ++GRN WNC F +GL+ +TDPS G C
Sbjct: 60 DCGAIQGTGGCARPDDNSLLSRASVAMNAYYQARGRNSWNCFFNGTGLITITDPSLGACK 119
Query: 368 YA 363
YA
Sbjct: 120 YA 121
Database: nr
Posted date: Apr 1, 2003 2:05 AM
Number of letters in database: 448,689,247
Number of sequences in database: 1,393,205
Lambda K H
0.318 0.135 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 660,046,127
Number of Sequences: 1393205
Number of extensions: 14230545
Number of successful extensions: 32052
Number of sequences better than 10.0: 122
Number of HSP's better than 10.0 without gapping: 30922
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 31965
length of database: 448,689,247
effective HSP length: 121
effective length of database: 280,111,442
effective search space used: 38935490438
frameshift window, decay const: 50, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
