Nr search
BLASTX 2.2.2 [Dec-14-2001]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= KMC005332A_C01 KMC005332A_c01
(623 letters)
Database: nr
1,393,205 sequences; 448,689,247 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
emb|CAC34409.1| ZF-HD homeobox protein [Flaveria bidentis] 98 1e-19
ref|NP_568570.1| putative protein; protein id: At5g39760.1, supp... 92 4e-18
gb|AAM64462.1| unknown [Arabidopsis thaliana] 92 5e-18
emb|CAC34410.1| ZF-HD homeobox protein [Flaveria bidentis] 92 7e-18
ref|NP_189534.1| unknown protein; protein id: At3g28920.1, suppo... 90 3e-17
>emb|CAC34409.1| ZF-HD homeobox protein [Flaveria bidentis]
Length = 339
Score = 97.8 bits (242), Expect = 1e-19
Identities = 52/106 (49%), Positives = 66/106 (62%), Gaps = 24/106 (22%)
Frame = -2
Query: 622 KMLEFAERVGWKMQKRDEDLVMEFCHEVGVDRGVLKLWMHNHKNTF-GKRD---HAAANG 455
KM E AERVGWKMQK+DEDL++ FC+E+GVD+GV K+WMHN+K TF GK+D H A NG
Sbjct: 234 KMHELAERVGWKMQKKDEDLIIGFCNEIGVDKGVFKVWMHNNKMTFGGKKDSDNHLAGNG 293
Query: 454 GAGGG--------------------DDDGAGGGERAINGNGNGSAA 377
+GGG D +GGG AI NG+ S++
Sbjct: 294 SSGGGLDFFNRNNHQQQQQQQPQNNDSVTSGGGGNAIGTNGSSSSS 339
>ref|NP_568570.1| putative protein; protein id: At5g39760.1, supported by cDNA:
249321., supported by cDNA: gi_20259469 [Arabidopsis
thaliana] gi|10177976|dbj|BAB11382.1|
gene_id:MKM21.8~pir||T00609~similar to unknown protein
[Arabidopsis thaliana] gi|20259470|gb|AAM13855.1|
unknown protein [Arabidopsis thaliana]
gi|21436443|gb|AAM51422.1| unknown protein [Arabidopsis
thaliana]
Length = 334
Score = 92.4 bits (228), Expect = 4e-18
Identities = 52/124 (41%), Positives = 65/124 (51%), Gaps = 41/124 (33%)
Frame = -2
Query: 622 KMLEFAERVGWKMQKRDEDLVMEFCHEVGVDRGVLKLWMHNHKNTFGKRD---------- 473
KM EFAERVGWKMQKRDED V +FC ++GVD+ VLK+WMHN+KNTF +RD
Sbjct: 214 KMHEFAERVGWKMQKRDEDDVRDFCRQIGVDKSVLKVWMHNNKNTFNRRDIAGNEIRQID 273
Query: 472 -------------------------------HAAANGGAGGGDDDGAGGGERAINGNGNG 386
+ ++GG GGG D +GG A GN NG
Sbjct: 274 NGGGNHTPILAGEINNHNNGHHGVGGGGELHQSVSSGGGGGGFDSDSGG---ANGGNVNG 330
Query: 385 SAAS 374
S++S
Sbjct: 331 SSSS 334
>gb|AAM64462.1| unknown [Arabidopsis thaliana]
Length = 333
Score = 92.0 bits (227), Expect = 5e-18
Identities = 51/124 (41%), Positives = 65/124 (52%), Gaps = 41/124 (33%)
Frame = -2
Query: 622 KMLEFAERVGWKMQKRDEDLVMEFCHEVGVDRGVLKLWMHNHKNTFGKRD---------- 473
KM EFAERVGWKMQKRD+D V +FC ++GVD+ VLK+WMHN+KNTF +RD
Sbjct: 213 KMHEFAERVGWKMQKRDZDDVRDFCRQIGVDKSVLKVWMHNNKNTFNRRDIAGNEIRQID 272
Query: 472 -------------------------------HAAANGGAGGGDDDGAGGGERAINGNGNG 386
+ ++GG GGG D +GG A GN NG
Sbjct: 273 NGGGNHTPILAGEINNHNNGHHGVGGGGELHQSVSSGGGGGGFDSDSGG---ANGGNVNG 329
Query: 385 SAAS 374
S++S
Sbjct: 330 SSSS 333
>emb|CAC34410.1| ZF-HD homeobox protein [Flaveria bidentis]
Length = 259
Score = 91.7 bits (226), Expect = 7e-18
Identities = 50/102 (49%), Positives = 68/102 (66%), Gaps = 6/102 (5%)
Frame = -2
Query: 622 KMLEFAERVGWKMQKRDEDLVMEFCHEVGVDRGVLKLWMHNHKNT-FGKRDHA-----AA 461
KM E AERVGWKMQK+DEDL++ FC+E+GVD+GV K+WMHN+K T GK+D A +
Sbjct: 144 KMHELAERVGWKMQKKDEDLIINFCNEIGVDKGVFKVWMHNNKMTSAGKKDSAHQLVDSG 203
Query: 460 NGGAGGGDDDGAGGGERAINGNGNGSAASQDPNQYENDSGTN 335
+ GAGG G GGG+ ++ N + Q+ NDSG++
Sbjct: 204 SSGAGG----GGGGGDFLMSRNYHHLQQQQN-----NDSGSS 236
>ref|NP_189534.1| unknown protein; protein id: At3g28920.1, supported by cDNA:
gi_20260543 [Arabidopsis thaliana]
gi|9294358|dbj|BAB02255.1| contains similarity to
unknown protein~gb|AAF24606.1~gene_id:MYI13.1
[Arabidopsis thaliana] gi|20260544|gb|AAM13170.1|
unknown protein [Arabidopsis thaliana]
gi|22136284|gb|AAM91220.1| unknown protein [Arabidopsis
thaliana]
Length = 312
Score = 89.7 bits (221), Expect = 3e-17
Identities = 49/101 (48%), Positives = 65/101 (63%), Gaps = 7/101 (6%)
Frame = -2
Query: 622 KMLEFAERVGWKMQKRDEDLVMEFCHEVGVDRGVLKLWMHNHKNTF-----GKRDHAAAN 458
KM EFA+R+GWK+QKRDED V +FC E+GVD+GVLK+WMHN+KN+F G +
Sbjct: 206 KMHEFADRIGWKIQKRDEDEVRDFCREIGVDKGVLKVWMHNNKNSFKFSGGGATTVQRND 265
Query: 457 GGAGG--GDDDGAGGGERAINGNGNGSAASQDPNQYENDSG 341
G GG +DDG G A +G+G G ++E+DSG
Sbjct: 266 NGIGGENSNDDGVRG--LANDGDGGG-------GRFESDSG 297
Database: nr
Posted date: Apr 1, 2003 2:05 AM
Number of letters in database: 448,689,247
Number of sequences in database: 1,393,205
Lambda K H
0.318 0.135 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 540,506,434
Number of Sequences: 1393205
Number of extensions: 13064718
Number of successful extensions: 216498
Number of sequences better than 10.0: 1107
Number of HSP's better than 10.0 without gapping: 77585
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 168791
length of database: 448,689,247
effective HSP length: 118
effective length of database: 284,291,057
effective search space used: 25301904073
frameshift window, decay const: 50, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
