Nr search
BLASTX 2.2.2 [Dec-14-2001]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= KMC005331A_C01 KMC005331A_c01
(847 letters)
Database: nr
1,393,205 sequences; 448,689,247 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
ref|NP_180345.1| hypothetical protein; protein id: At2g27770.1 [... 220 8e-59
gb|AAM76760.1| hypothetical protein [Arabidopsis thaliana] 213 3e-55
ref|NP_198167.1| putative protein; protein id: At5g28150.1, supp... 147 2e-34
ref|NP_565847.1| expressed protein; protein id: At2g36470.1, sup... 144 2e-33
ref|NP_566240.1| expressed protein; protein id: At3g04860.1, sup... 144 2e-33
>ref|NP_180345.1| hypothetical protein; protein id: At2g27770.1 [Arabidopsis
thaliana] gi|25407920|pir||G84676 hypothetical protein
At2g27770 [imported] - Arabidopsis thaliana
gi|3860255|gb|AAC73023.1| hypothetical protein
[Arabidopsis thaliana] gi|26449502|dbj|BAC41877.1|
unknown protein [Arabidopsis thaliana]
gi|28950899|gb|AAO63373.1| At2g27770 [Arabidopsis
thaliana]
Length = 320
Score = 220 bits (561), Expect(2) = 8e-59
Identities = 115/182 (63%), Positives = 146/182 (80%), Gaps = 10/182 (5%)
Frame = -1
Query: 847 IFWDLSNANYDS---GPEPVDGFYVLILVDSEIGLVLGDMAGETVSKKFKINSPVAKVSL 677
+FWDLS+A YDS GPEP++GFYV++LVD ++GL+LGD + ET+ KK SL
Sbjct: 119 VFWDLSSAKYDSNLCGPEPINGFYVIVLVDGQMGLLLGDSSEETLRKKGFSGDIGFDFSL 178
Query: 676 LSRREHCSGNS-LYTTKAQFCDSGTWHDVLIRCSVEESEGLFKS---PVLSVCIDKKTVI 509
+SR+EH +GN+ Y+TK +F ++G H+++IRC+ +E+EGL +S PVLSVCIDKKTVI
Sbjct: 179 VSRQEHFTGNNTFYSTKVRFVETGDSHEIVIRCN-KETEGLKQSNHYPVLSVCIDKKTVI 237
Query: 508 RVKRLQWNFRGNQTIFVDGLLVDLLWDVHDWFFN--PASGDAVFMFRTRSGLD-SRLWLE 338
+VKRLQWNFRGNQTIF+DGLLVDL+WDVHDWFF+ A G AVFMFRTR+GLD SRLWLE
Sbjct: 238 KVKRLQWNFRGNQTIFLDGLLVDLMWDVHDWFFSNQGACGRAVFMFRTRNGLDSSRLWLE 297
Query: 337 EK 332
EK
Sbjct: 298 EK 299
Score = 29.6 bits (65), Expect(2) = 8e-59
Identities = 12/22 (54%), Positives = 19/22 (85%), Gaps = 1/22 (4%)
Frame = -2
Query: 333 RVAQKDK-DRVEFSLLIYACKT 271
++ +KD+ D+++FSL IYACKT
Sbjct: 299 KIVKKDQQDKLDFSLFIYACKT 320
>gb|AAM76760.1| hypothetical protein [Arabidopsis thaliana]
Length = 320
Score = 213 bits (542), Expect(2) = 3e-55
Identities = 113/182 (62%), Positives = 142/182 (77%), Gaps = 10/182 (5%)
Frame = -1
Query: 847 IFWDLSNANYDS---GPEPVDGFYVLILVDSEIGLVLGDMAGETVSKKFKINSPVAKVSL 677
+FWDLS+A YDS GP ++GFYV++LVD +GL+LGD + ET+ KK SL
Sbjct: 119 VFWDLSSAKYDSNLCGPGTINGFYVIVLVDGSMGLLLGDSSEETLRKKGFSGDIGFDFSL 178
Query: 676 LSRREHCSGNS-LYTTKAQFCDSGTWHDVLIRCSVEESEGLFKS---PVLSVCIDKKTVI 509
SR+EH +GN+ Y+TK +F ++G H+++IRC+ +E+EGL +S PVLSVCIDKKTVI
Sbjct: 179 XSRQEHFTGNNTFYSTKVRFVETGDSHEIVIRCN-KETEGLKQSNHYPVLSVCIDKKTVI 237
Query: 508 RVKRLQWNFRGNQTIFVDGLLVDLLWDVHDWFFN--PASGDAVFMFRTRSGLD-SRLWLE 338
+VKRLQWNFRGNQTIF+DGLLVDL+WDVHDWFF+ A G AVFMFRTR+GLD SRLWLE
Sbjct: 238 KVKRLQWNFRGNQTIFLDGLLVDLMWDVHDWFFSNQGACGRAVFMFRTRNGLDSSRLWLE 297
Query: 337 EK 332
EK
Sbjct: 298 EK 299
Score = 25.0 bits (53), Expect(2) = 3e-55
Identities = 11/22 (50%), Positives = 18/22 (81%), Gaps = 1/22 (4%)
Frame = -2
Query: 333 RVAQKDK-DRVEFSLLIYACKT 271
++ +KD+ D+++FSL IYA KT
Sbjct: 299 KIVKKDQQDKLDFSLFIYARKT 320
>ref|NP_198167.1| putative protein; protein id: At5g28150.1, supported by cDNA:
gi_19699076 [Arabidopsis thaliana]
gi|19699077|gb|AAL90906.1| AT5g28150/T24G3_80
[Arabidopsis thaliana] gi|23308357|gb|AAN18148.1|
At5g28150/T24G3_80 [Arabidopsis thaliana]
Length = 289
Score = 147 bits (371), Expect = 2e-34
Identities = 75/168 (44%), Positives = 106/168 (62%), Gaps = 1/168 (0%)
Frame = -1
Query: 847 IFWDLSNANYDSGPEPVDGFYVLILVDSEIGLVLGDMAGETVSKKFKINSPVAKVSLLSR 668
+FWDLS+A + SGPE + GFYV ++VD E+ L+LGDM E K S + V +++
Sbjct: 100 VFWDLSSAKFGSGPEALGGFYVGVVVDKEMVLLLGDMKKEAFKKTNASPSSLGAV-FIAK 158
Query: 667 REHCSGNSLYTTKAQFCDSGTWHDVLIRCSVEESEGLFKSPVLSVCIDKKTVIRVKRLQW 488
+EH G ++ TKAQ G +HD+LI C ++ P L V +D KT+++VKRL+W
Sbjct: 159 KEHVFGKRVFATKAQLFADGKFHDLLIECDTNVTD-----PCLVVRVDGKTLLQVKRLKW 213
Query: 487 NFRGNQTIFVDGLLVDLLWDVHDWFFN-PASGDAVFMFRTRSGLDSRL 347
FRGN TI V+ + V++LWDVH W F P +G+AVFMFRT + L
Sbjct: 214 KFRGNDTIVVNKMTVEVLWDVHSWLFGLPTTGNAVFMFRTCQSTEKSL 261
>ref|NP_565847.1| expressed protein; protein id: At2g36470.1, supported by cDNA:
109103. [Arabidopsis thaliana] gi|25408477|pir||B84781
hypothetical protein At2g36470 [imported] - Arabidopsis
thaliana gi|4581147|gb|AAD24631.1| expressed protein
[Arabidopsis thaliana]
Length = 327
Score = 144 bits (363), Expect = 2e-33
Identities = 83/205 (40%), Positives = 115/205 (55%), Gaps = 34/205 (16%)
Frame = -1
Query: 847 IFWDLSNANYDS-GPEPVDGFYVLILVDSEIGLVLGDMAGETVSKKFKINSPVAKVSLLS 671
I WDLS A Y++ GPEP+ F+V+++V+SEI L +GD+ E ++ + +S
Sbjct: 101 ILWDLSEAEYENNGPEPIRRFFVVVVVNSEITLGVGDVDHER-------DTSSSSSWRVS 153
Query: 670 RREHCSGNSLYTTKAQFCDSGTWHDVLIRCSVEESEG-------LFKSP-VLSVCIDKKT 515
+ E SG TTKAQF D G H++ I+C G KSP +SV +DK+
Sbjct: 154 KTERFSGTCWLTTKAQFSDVGRKHEIQIQCGGGGGGGGEEGYLWKVKSPETMSVYVDKRK 213
Query: 514 VIRVKRLQWNFRGNQTIFVDGLLVDLLWDVHDWFFNPASGD------------------- 392
V VK+L+WNFRGNQT+F DG+L+D++WD+HDWF+
Sbjct: 214 VFSVKKLKWNFRGNQTMFFDGMLIDMMWDLHDWFYKETLSSVSTSSSSKTASSSSSSSTS 273
Query: 391 ------AVFMFRTRSGLDSRLWLEE 335
AVFMFR RSGLDSRLW++E
Sbjct: 274 SSTPPCAVFMFRRRSGLDSRLWIDE 298
>ref|NP_566240.1| expressed protein; protein id: At3g04860.1, supported by cDNA:
5170., supported by cDNA: gi_16612260 [Arabidopsis
thaliana] gi|12322843|gb|AAG51405.1|AC009465_5 unknown
protein; 64727-65596 [Arabidopsis thaliana]
gi|16612261|gb|AAL27500.1|AF439828_1 AT3g04860/T9J14_19
[Arabidopsis thaliana] gi|21928087|gb|AAM78072.1|
AT3g04860/T9J14_19 [Arabidopsis thaliana]
Length = 289
Score = 144 bits (362), Expect = 2e-33
Identities = 74/161 (45%), Positives = 101/161 (61%), Gaps = 2/161 (1%)
Frame = -1
Query: 847 IFWDLSNANYDSGPEPVDGFYVLILVDSEIGLVLGDMAGETVSKKFKINSPVAKVSLLSR 668
+FWDLS+A + S PEP+ GFYV ++VD E+ L+LGDM E K S +++
Sbjct: 100 VFWDLSSAKFGSSPEPLGGFYVGVVVDKEMVLLLGDMKKEAFKKTNAAPSSSLGAVFIAK 159
Query: 667 REHCSGNSLYTTKAQFCDSGTWHDVLIRCSVEESEGLFKSPVLSVCIDKKTVIRVKRLQW 488
+EH G + TKAQF G HD++I C S+ P L V +D K +++V+RL W
Sbjct: 160 KEHVFGKRTFATKAQFSGDGKTHDLVIECDTSLSD-----PCLIVRVDGKILMQVQRLHW 214
Query: 487 NFRGNQTIFVDGLLVDLLWDVHDWFFN-PAS-GDAVFMFRT 371
FRGN TI V+ + V++LWDVH WFF P+S G+AVFMFRT
Sbjct: 215 KFRGNDTIIVNRISVEVLWDVHSWFFGLPSSPGNAVFMFRT 255
Database: nr
Posted date: Apr 1, 2003 2:05 AM
Number of letters in database: 448,689,247
Number of sequences in database: 1,393,205
Lambda K H
0.318 0.135 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 735,208,925
Number of Sequences: 1393205
Number of extensions: 16272144
Number of successful extensions: 51376
Number of sequences better than 10.0: 43
Number of HSP's better than 10.0 without gapping: 46888
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 51100
length of database: 448,689,247
effective HSP length: 122
effective length of database: 278,718,237
effective search space used: 44316199683
frameshift window, decay const: 50, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
