KMC005330A_c01
[Fasta Sequence]   [Nr Search]   [EST assemble image]  

Fasta Sequence
>KMC005330A_C01 KMC005330A_c01
actagaacacatttttatttaataattacttcttcatacgcattgtgAAGAACAACATGT
AGATCATCGATCAATAATGTTTTATTCGCTCGAGTACAAGGCTAATCCAAGTAGCCCACA
GAAAAACAAAAACAACACTAAAGGATACAACAGCCCAAGACACAACAAAGAAAAATAAAG
GAATTGAAGCATCTAAAAACAACAGGGCGAAAAAAAACATCAACAAACAACAGCAAAGAA
GTAACATAAAGGGACACATCAACCACAAGCTTAACAGTACCAACGTGATGCAGCCACGCC
TAGAACAAATAGATGGGGGAAACTACCAAGATCAGCTGAGAACAACCAGGCACAACCACC
GAGAAAGAGATAATTGAGGTAGGGAAAGAACTATCCACATAATTTTTTTTTTTCAATTTT
GAGTGTAAACTTGGGTAGATGGGCGTGGTGTAAGAATGACTTTGAGTGGAGAAGCTTTGC
TGTTGGTTAACCCGGACACTTCAACCATATCAACTGGTCCTCCATCAACAGTCACTATAT
CAAACCCATGCAATAATGTAGCAAGTGTCATTTGAATCAGTTGAAGAGCGTAAGAGATTC
CAGGACATATTCTTCTGCCTGCACCAAATGGAATGAGCTCAAAATTTTTTCCCTTCATAT
CAAGGTCTTTATGGGTTGTGAGGTATCTCTCTGGACGAAACTCCATTGGATCAGAATATA
TTGAAGGATCCCGTTGAATTTTTGAAATGTTAGTCACGAGAGATGTGCCAGCGGGCACAT
GGTATCCACCCACAACACAATCTTCCATAGACATGTGAGTCACATTTAATGGTGCGACTG
GGTATAAGCGCAATGTTTCCTTAATAATGGCTTGAAGATACACCAATTTCTCAAAGTCTG
ATTCCATTATCTTAGTTCTTCCTCCCATTTG


Nr search

BLASTX 2.2.2 [Dec-14-2001]

Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= KMC005330A_C01 KMC005330A_c01
         (931 letters)

Database: nr 
           1,393,205 sequences; 448,689,247 total letters

Searching..................................................done

                                                                   Score     E
Sequences producing significant alignments:                        (bits)  Value

sp|O49858|C823_SOYBN Cytochrome P450 82A3 (P450 CP6) gi|7430684|...   209  6e-53
pir||T05942 cytochrome P450 82C1 - soybean gi|2739004|gb|AAB9459...   199  4e-50
sp|O81972|C822_SOYBN Cytochrome P450 82A2 (P450 CP4) gi|7430687|...   198  8e-50
sp|O49859|C824_SOYBN Cytochrome P450 82A4 (P450 CP9) gi|7430685|...   198  8e-50
pir||T07964 (S)-N-methylcoclaurine 3'-hydroxylase (EC 1.1.3.-) -...   194  2e-48

>sp|O49858|C823_SOYBN Cytochrome P450 82A3 (P450 CP6) gi|7430684|pir||T07748 probable
           cytochrome P450 - soybean gi|2765091|emb|CAA71876.1|
           putative cytochrome P450 [Glycine max]
          Length = 527

 Score =  209 bits (531), Expect = 6e-53
 Identities = 95/169 (56%), Positives = 125/169 (73%)
 Frame = -1

Query: 931 QMGGRTKIMESDFEKLVYLQAIIKETLRLYPVAPLNVTHMSMEDCVVGGYHVPAGTSLVT 752
           Q+G    I ESD  KLVYLQAI+KETLRLYP AP +      E+C++GGYH+  GT L+ 
Sbjct: 356 QIGKDEYIRESDISKLVYLQAIVKETLRLYPPAPFSSPREFTENCILGGYHIKKGTRLIH 415

Query: 751 NISKIQRDPSIYSDPMEFRPERYLTTHKDLDMKGKNFELIPFGAGRRICPGISYALQLIQ 572
           N+ KI RDPS++SDP+EF+PER+LTTHKD+D++G NFEL+PFG+GRR+C G+S  L ++ 
Sbjct: 416 NLWKIHRDPSVWSDPLEFKPERFLTTHKDVDLRGHNFELLPFGSGRRVCAGMSLGLNMVH 475

Query: 571 MTLATLLHGFDIVTVDGGPVDMVEVSGLTNSKASPLKVILTPRPSTQVY 425
            TLA LLH FDI+     PVDM E  G TN+KA+PL++++ PR S   Y
Sbjct: 476 FTLANLLHSFDILNPSAEPVDMTEFFGFTNTKATPLEILVKPRQSPNYY 524

>pir||T05942 cytochrome P450 82C1 - soybean gi|2739004|gb|AAB94590.1| CYP82C1p
           [Glycine max]
          Length = 532

 Score =  199 bits (507), Expect = 4e-50
 Identities = 93/169 (55%), Positives = 127/169 (75%), Gaps = 1/169 (0%)
 Frame = -1

Query: 928 MGGRTKIMESDFEKLVYLQAIIKETLRLYPVAPLNVTHMSMEDCVV-GGYHVPAGTSLVT 752
           +G   K+ ESD  KLVYLQAI+KET+RLYP +PL     +MEDC   GGYH+PAGT L+ 
Sbjct: 362 IGKDRKVEESDITKLVYLQAIVKETMRLYPPSPLITLRAAMEDCTFSGGYHIPAGTRLMV 421

Query: 751 NISKIQRDPSIYSDPMEFRPERYLTTHKDLDMKGKNFELIPFGAGRRICPGISYALQLIQ 572
           N  KI RD  ++SDP +F+P R+LT+HKD+D+KG+N+EL+PFG+GRR CPG S AL+++ 
Sbjct: 422 NAWKIHRDGRVWSDPHDFKPGRFLTSHKDVDVKGQNYELVPFGSGRRACPGASLALRVVH 481

Query: 571 MTLATLLHGFDIVTVDGGPVDMVEVSGLTNSKASPLKVILTPRPSTQVY 425
           +T+A LLH F++ +     VDM E  GLTN KA+PL+++LTPR  T++Y
Sbjct: 482 LTMARLLHSFNVASPSNQVVDMTESIGLTNLKATPLEILLTPRLDTKLY 530

>sp|O81972|C822_SOYBN Cytochrome P450 82A2 (P450 CP4) gi|7430687|pir||T07118 probable
           cytochrome P450 CP4 - soybean gi|3334663|emb|CAA71515.1|
           putative cytochrome P450 [Glycine max]
          Length = 522

 Score =  198 bits (504), Expect = 8e-50
 Identities = 92/169 (54%), Positives = 125/169 (73%)
 Frame = -1

Query: 931 QMGGRTKIMESDFEKLVYLQAIIKETLRLYPVAPLNVTHMSMEDCVVGGYHVPAGTSLVT 752
           Q+G    I ESD  KL YLQA++KETLRLYP APL+      EDC +GGY V  GT L+T
Sbjct: 351 QVGKERYICESDLSKLTYLQAVVKETLRLYPPAPLSRPREFEEDCTIGGYTVKKGTRLIT 410

Query: 751 NISKIQRDPSIYSDPMEFRPERYLTTHKDLDMKGKNFELIPFGAGRRICPGISYALQLIQ 572
           N+SKI  D +++S+P+EF+PER+LTT KD+DMKG++F+L+PFG GRRICPGI+  LQ ++
Sbjct: 411 NLSKIHTDHNVWSNPLEFKPERFLTTDKDIDMKGQHFQLLPFGGGRRICPGINLGLQTVR 470

Query: 571 MTLATLLHGFDIVTVDGGPVDMVEVSGLTNSKASPLKVILTPRPSTQVY 425
           +TLA+ LH F+I+     P+DM EV   TN+KA+PL++++ PR S   Y
Sbjct: 471 LTLASFLHSFEILNPSTEPLDMTEVFRATNTKATPLEILIKPRLSPSCY 519

>sp|O49859|C824_SOYBN Cytochrome P450 82A4 (P450 CP9) gi|7430685|pir||T07749 probable
           cytochrome P450 - soybean gi|2765093|emb|CAA71877.1|
           putative cytochrome P450 [Glycine max]
          Length = 525

 Score =  198 bits (504), Expect = 8e-50
 Identities = 91/169 (53%), Positives = 123/169 (71%)
 Frame = -1

Query: 931 QMGGRTKIMESDFEKLVYLQAIIKETLRLYPVAPLNVTHMSMEDCVVGGYHVPAGTSLVT 752
           Q+G    I ESD   LVYLQA++KETLRLY   PL+      EDC +GGYHV  GT L+T
Sbjct: 354 QVGKDRCICESDISNLVYLQAVVKETLRLYAPGPLSSPREFAEDCTLGGYHVKKGTRLIT 413

Query: 751 NISKIQRDPSIYSDPMEFRPERYLTTHKDLDMKGKNFELIPFGAGRRICPGISYALQLIQ 572
           NI KI  DP+++SDP EF+P+R+LTTHKD+D+KG +F+L+PFG+GRR+CPGIS+ LQ + 
Sbjct: 414 NIWKIHTDPNVWSDPFEFKPDRFLTTHKDIDVKGHHFQLLPFGSGRRVCPGISFGLQTVH 473

Query: 571 MTLATLLHGFDIVTVDGGPVDMVEVSGLTNSKASPLKVILTPRPSTQVY 425
           + LA+ LH F+I+     P+DM E  G+TN+KA+PL+V++ P  S   Y
Sbjct: 474 LALASFLHSFEILNPSTEPLDMTEAFGVTNTKATPLEVLVKPCLSPSCY 522

>pir||T07964 (S)-N-methylcoclaurine 3'-hydroxylase (EC 1.1.3.-) - California
           poppy gi|3127031|gb|AAC39454.1| (S)-N-methylcoclaurine
           3'-hydroxylase [Eschscholzia californica]
          Length = 560

 Score =  194 bits (493), Expect = 2e-48
 Identities = 92/172 (53%), Positives = 123/172 (71%), Gaps = 3/172 (1%)
 Frame = -1

Query: 931 QMGGRTKIMESDFEKLVYLQAIIKETLRLYPVAPLNVTHMSMEDCVVGGYHVPAGTSLVT 752
           ++G    + E D + LVYLQAI+KETLR+YP  PL+V H ++EDC VGGYH+  GT L+ 
Sbjct: 387 KVGRDRHVEEKDIDNLVYLQAIVKETLRMYPAGPLSVPHEAIEDCNVGGYHIKTGTRLLV 446

Query: 751 NISKIQRDPSIYSDPMEFRPERYLTTHKD---LDMKGKNFELIPFGAGRRICPGISYALQ 581
           NI K+QRDP ++S+P EFRPER+L    +   LD +G++FE IPFG+GRR+CPG+++A  
Sbjct: 447 NIWKLQRDPRVWSNPSEFRPERFLDNQSNGTLLDFRGQHFEYIPFGSGRRMCPGVNFATL 506

Query: 580 LIQMTLATLLHGFDIVTVDGGPVDMVEVSGLTNSKASPLKVILTPRPSTQVY 425
           ++ MTLA LL  FD+ T    PVDM E SGLT  K +PLKV+LTPR    +Y
Sbjct: 507 ILHMTLARLLQAFDLSTPSSSPVDMTEGSGLTMPKVTPLKVLLTPRLPLPLY 558

  Database: nr
    Posted date:  Apr 1, 2003  2:05 AM
  Number of letters in database: 448,689,247
  Number of sequences in database:  1,393,205
  
Lambda     K      H
   0.318    0.135    0.401 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 

Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 833,851,109
Number of Sequences: 1393205
Number of extensions: 19460729
Number of successful extensions: 70520
Number of sequences better than 10.0: 3134
Number of HSP's better than 10.0 without gapping: 59408
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 66689
length of database: 448,689,247
effective HSP length: 123
effective length of database: 277,325,032
effective search space used: 51582455952
frameshift window, decay const: 50,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)


EST assemble image


clone accession position
1 MPDL006b04_f AV776806 1 336
2 MFB036b09_f BP036621 48 559
3 MFBL009d02_f BP041719 68 560
4 MPDL035a01_f AV778214 96 574
5 MWM178e12_f AV767479 96 423
6 MFBL034c03_f BP042958 431 931
7 MFBL008a06_f BP041651 443 794




Lotus japonicus
Kazusa DNA Research Institute