Nr search
BLASTX 2.2.2 [Dec-14-2001]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= KMC005326A_C01 KMC005326A_c01
(338 letters)
Database: nr
1,393,205 sequences; 448,689,247 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
gb|AAB59224.1| NADH dehydrogenase subunit 4 35 0.25
pir||C22845 NADH2 dehydrogenase (ubiquinone) (EC 1.6.5.3) chain ... 34 0.55
gb|AAL38221.1|AF411932_1 normocyte-binding protein 1 [Plasmodium... 33 0.72
gb|AAL38222.1|AF411933_1 normocyte-binding protein 1 [Plasmodium... 33 0.94
dbj|BAB14313.1| unnamed protein product [Homo sapiens] 33 1.2
>gb|AAB59224.1| NADH dehydrogenase subunit 4
Length = 437
Score = 35.0 bits (79), Expect = 0.25
Identities = 20/83 (24%), Positives = 43/83 (51%), Gaps = 2/83 (2%)
Frame = -1
Query: 320 LLIVQLTCVMYRRWFYILLIFFLIHFSVLVLACGYKRHEA*VSGLVMLGIIF--LFFCNF 147
+ ++ CV Y ++FYI++I+ I+ +V+++ + + I F LFF
Sbjct: 61 IFLLSKKCVSYNKYFYIVMIYMYIYINVVLIII--------LDDFMCFMIAFESLFFPIC 112
Query: 146 VLTFSFHFSLPYCFLVFPSVLLS 78
+L+ F+F+ + F +F ++ S
Sbjct: 113 LLSLFFNFNNRFIFAIFYLIIFS 135
>pir||C22845 NADH2 dehydrogenase (ubiquinone) (EC 1.6.5.3) chain 4 - Trypanosoma
brucei mitochondrion
Length = 439
Score = 33.9 bits (76), Expect = 0.55
Identities = 19/83 (22%), Positives = 43/83 (50%), Gaps = 2/83 (2%)
Frame = -1
Query: 320 LLIVQLTCVMYRRWFYILLIFFLIHFSVLVLACGYKRHEA*VSGLVMLGIIF--LFFCNF 147
+ ++ CV Y ++FYI++I+ I+ +V+++ + + I F LFF
Sbjct: 64 IFLLSKKCVSYNKYFYIVMIYMYIYINVVLIII--------LDDFMCFMIAFESLFFPIC 115
Query: 146 VLTFSFHFSLPYCFLVFPSVLLS 78
+++ F+F+ + F +F ++ S
Sbjct: 116 LVSLFFNFNNRFIFAIFYLIIFS 138
>gb|AAL38221.1|AF411932_1 normocyte-binding protein 1 [Plasmodium falciparum]
Length = 401
Score = 33.5 bits (75), Expect = 0.72
Identities = 19/76 (25%), Positives = 40/76 (52%)
Frame = +3
Query: 72 LLRQQN*GKNKETIRQRKMKRKSQNKITEE*KDDAQHH*TTHSCLMSFISTGQNQN*KMY 251
L+ + N ++E+ + +MK +++N + ++ ++ HH H+ + QNQN K
Sbjct: 232 LITKPNNNSSEESHQNEQMKEQNKNILEKQTRNIKPHHVHNHNH-----NHNQNQNQKDS 286
Query: 252 QKKYKQDVKPSSIHHT 299
K +QD+ +H+T
Sbjct: 287 TKLQEQDISTHKLHNT 302
>gb|AAL38222.1|AF411933_1 normocyte-binding protein 1 [Plasmodium falciparum]
Length = 405
Score = 33.1 bits (74), Expect = 0.94
Identities = 19/76 (25%), Positives = 41/76 (53%)
Frame = +3
Query: 72 LLRQQN*GKNKETIRQRKMKRKSQNKITEE*KDDAQHH*TTHSCLMSFISTGQNQN*KMY 251
L+ + N ++E+ + +MK +++N + ++ ++ HH H+ + + QNQN K
Sbjct: 232 LITKPNNNSSEESHQNEQMKEQNKNILEKQTRNIKPHHVHNHNHNHNH-NHNQNQNQKDS 290
Query: 252 QKKYKQDVKPSSIHHT 299
K +QD+ +H+T
Sbjct: 291 TKLQEQDISTHKLHNT 306
>dbj|BAB14313.1| unnamed protein product [Homo sapiens]
Length = 838
Score = 32.7 bits (73), Expect = 1.2
Identities = 26/89 (29%), Positives = 39/89 (43%), Gaps = 2/89 (2%)
Frame = +2
Query: 35 NHESIYKIWSVISAETTELREKQGNNTAKKNEKKKSEQNYRRIER*CPASLNHSLMPHVF 214
N E ++K+WSVI TEL N T + N+ E N+ I +NH F
Sbjct: 465 NKEHLWKMWSVIVTPLTELI----NQTNEVNQGDALEHNFSAIYGALTLPVNHIFSEQRF 520
Query: 215 YIHRPKPKLKNVSK--KI*ARCKTIFYTS 295
+ K L+ S+ + ARC + T+
Sbjct: 521 PVATMKTLLRTWSELYRAFARCAALVATA 549
Database: nr
Posted date: Apr 1, 2003 2:05 AM
Number of letters in database: 448,689,247
Number of sequences in database: 1,393,205
Lambda K H
0.318 0.135 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 269,317,636
Number of Sequences: 1393205
Number of extensions: 5274385
Number of successful extensions: 27512
Number of sequences better than 10.0: 40
Number of HSP's better than 10.0 without gapping: 26094
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 27404
length of database: 448,689,247
effective HSP length: 88
effective length of database: 326,087,207
effective search space used: 7826092968
frameshift window, decay const: 50, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
