Nr search
BLASTX 2.2.2 [Dec-14-2001]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= KMC005325A_C01 KMC005325A_c01
(647 letters)
Database: nr
1,393,205 sequences; 448,689,247 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
sp|P14226|PSBO_PEA Oxygen-evolving enhancer protein 1, chloropla... 294 6e-79
sp|Q40459|PSBO_TOBAC Oxygen-evolving enhancer protein 1, chlorop... 285 3e-76
sp|P23322|PSBO_LYCES Oxygen-evolving enhancer protein 1, chlorop... 285 4e-76
prf||1204192A photosystem II protein 33kD 285 5e-76
pir||S00415 photosystem II oxygen-evolving complex protein 1 pre... 285 5e-76
>sp|P14226|PSBO_PEA Oxygen-evolving enhancer protein 1, chloroplast precursor (OEE1)
(33 kDa subunit of oxygen evolving system of photosystem
II) (OEC 33 kDa subunit) (33 kDa thylakoid membrane
protein) gi|81934|pir||S04132 photosystem II
oxygen-evolving complex protein 1 precursor - garden pea
gi|20621|emb|CAA33408.1| precursor (AA -81 to 248)
[Pisum sativum] gi|344004|dbj|BAA02554.1| precursor for
33-kDa protein of photosystem II [Pisum sativum]
gi|226937|prf||1611461A O2 evolving complex 33kD protein
Length = 329
Score = 294 bits (753), Expect = 6e-79
Identities = 145/154 (94%), Positives = 152/154 (98%)
Frame = -2
Query: 646 VSPDGTVKFEEKDGIDYAAVTVQLPGGERVPFLFTVKQLVASGKPESFSGDFLVPSYRGS 467
VS DG+VKFEEKDGIDYAAVTVQLPGGERVPFLFT+KQLVASGKP+SFSG+FLVPSYRGS
Sbjct: 176 VSADGSVKFEEKDGIDYAAVTVQLPGGERVPFLFTIKQLVASGKPDSFSGEFLVPSYRGS 235
Query: 466 SFLDPKGRGASTGYDNAVALPAGGRGDEEELAKENNKSASSSKGKITLSVTQSKPETGEI 287
SFLDPKGRGASTGYDNAVALPAGGRGDEEEL KENNKSA+SSKGKITLSVTQ+KPETGE+
Sbjct: 236 SFLDPKGRGASTGYDNAVALPAGGRGDEEELGKENNKSAASSKGKITLSVTQTKPETGEV 295
Query: 286 IGVFESIQPSDTDLGAKAPKDVKIQGVWYAQLES 185
IGVFESIQPSDTDLGAKAPKDVKIQGVWYAQLES
Sbjct: 296 IGVFESIQPSDTDLGAKAPKDVKIQGVWYAQLES 329
>sp|Q40459|PSBO_TOBAC Oxygen-evolving enhancer protein 1, chloroplast precursor (OEE1)
(33 kDa subunit of oxygen evolving system of photosystem
II) (OEC 33 kDa subunit) (33 kDa thylakoid membrane
protein) gi|7489173|pir||T02066 photosystem II
oxygen-evolving complex protein 1 precursor - common
tobacco gi|505482|emb|CAA45701.1| 33 kDa polypeptide of
water-oxidizing complex of photosystem II [Nicotiana
tabacum]
Length = 332
Score = 285 bits (730), Expect = 3e-76
Identities = 141/153 (92%), Positives = 146/153 (95%)
Frame = -2
Query: 646 VSPDGTVKFEEKDGIDYAAVTVQLPGGERVPFLFTVKQLVASGKPESFSGDFLVPSYRGS 467
VS DGTVKFEEKDGIDYAAVTVQLPGGERVPFLFT+KQLVASGKPESFSG+FLVPSYRGS
Sbjct: 180 VSSDGTVKFEEKDGIDYAAVTVQLPGGERVPFLFTIKQLVASGKPESFSGEFLVPSYRGS 239
Query: 466 SFLDPKGRGASTGYDNAVALPAGGRGDEEELAKENNKSASSSKGKITLSVTQSKPETGEI 287
SFLDPKGRG STGYDNAVALPAGGRGDEEEL KEN K+ SSS GKITLSVTQSKPETGE+
Sbjct: 240 SFLDPKGRGGSTGYDNAVALPAGGRGDEEELQKENVKNTSSSTGKITLSVTQSKPETGEV 299
Query: 286 IGVFESIQPSDTDLGAKAPKDVKIQGVWYAQLE 188
IGVFESIQPSDTDLGAK PKDVKIQG+WYAQLE
Sbjct: 300 IGVFESIQPSDTDLGAKVPKDVKIQGIWYAQLE 332
>sp|P23322|PSBO_LYCES Oxygen-evolving enhancer protein 1, chloroplast precursor (OEE1)
(33 kDa subunit of oxygen evolving system of photosystem
II) (OEC 33 kDa subunit) (33 kDa thylakoid membrane
protein) gi|7489040|pir||T06368 photosystem II
oxygen-evolving complex protein 1 precursor - tomato
gi|19157|emb|CAA78043.1| 33kDa precursor protein of
oxygen-evolving complex [Lycopersicon esculentum]
gi|738944|prf||2001459A O2 evolving protein
complex:SUBUNIT=33kD
Length = 329
Score = 285 bits (729), Expect = 4e-76
Identities = 140/153 (91%), Positives = 146/153 (94%)
Frame = -2
Query: 646 VSPDGTVKFEEKDGIDYAAVTVQLPGGERVPFLFTVKQLVASGKPESFSGDFLVPSYRGS 467
VSPDGTVKFEEKDGIDYAAVTVQLPGGERVPFLFT+KQLVASGKPESFSG+FLVPSYRGS
Sbjct: 177 VSPDGTVKFEEKDGIDYAAVTVQLPGGERVPFLFTIKQLVASGKPESFSGEFLVPSYRGS 236
Query: 466 SFLDPKGRGASTGYDNAVALPAGGRGDEEELAKENNKSASSSKGKITLSVTQSKPETGEI 287
SFLDPKGRG STGYDNAVALPAGGRGDEEEL KEN K+ +S GKITLSVTQSKPETGE+
Sbjct: 237 SFLDPKGRGGSTGYDNAVALPAGGRGDEEELQKENVKNTASLTGKITLSVTQSKPETGEV 296
Query: 286 IGVFESIQPSDTDLGAKAPKDVKIQGVWYAQLE 188
IGVFESIQPSDTDLGAK PKDVKIQG+WYAQLE
Sbjct: 297 IGVFESIQPSDTDLGAKVPKDVKIQGIWYAQLE 329
>prf||1204192A photosystem II protein 33kD
Length = 248
Score = 285 bits (728), Expect = 5e-76
Identities = 139/153 (90%), Positives = 146/153 (94%)
Frame = -2
Query: 646 VSPDGTVKFEEKDGIDYAAVTVQLPGGERVPFLFTVKQLVASGKPESFSGDFLVPSYRGS 467
VS DGTVKFEEKDGIDYAAVTVQLPGGERVPFLFT+KQLVASGKPESFSGDFLVPSYRGS
Sbjct: 94 VSSDGTVKFEEKDGIDYAAVTVQLPGGERVPFLFTIKQLVASGKPESFSGDFLVPSYRGS 153
Query: 466 SFLDPKGRGASTGYDNAVALPAGGRGDEEELAKENNKSASSSKGKITLSVTQSKPETGEI 287
SFLDPKGRG STGYDNAVALPAGGRGDEEEL KENNK+ +SSKG ITLSVT SKPETGE+
Sbjct: 154 SFLDPKGRGGSTGYDNAVALPAGGRGDEEELQKENNKNVASSKGTITLSVTSSKPETGEV 213
Query: 286 IGVFESIQPSDTDLGAKAPKDVKIQGVWYAQLE 188
IGVF+S+QPSDTDLGAK PKDVKI+GVWYAQLE
Sbjct: 214 IGVFQSLQPSDTDLGAKVPKDVKIEGVWYAQLE 246
>pir||S00415 photosystem II oxygen-evolving complex protein 1 precursor -
spinach gi|21283|emb|CAA29062.1| 33kDa precursor protein
(AA 1-331) [Spinacia oleracea] gi|225955|prf||1404364A
protein 33kD
Length = 331
Score = 285 bits (728), Expect = 5e-76
Identities = 139/153 (90%), Positives = 146/153 (94%)
Frame = -2
Query: 646 VSPDGTVKFEEKDGIDYAAVTVQLPGGERVPFLFTVKQLVASGKPESFSGDFLVPSYRGS 467
VS DGTVKFEEKDGIDYAAVTVQLPGGERVPFLFT+KQLVASGKPESFSGDFLVPSYRGS
Sbjct: 178 VSSDGTVKFEEKDGIDYAAVTVQLPGGERVPFLFTIKQLVASGKPESFSGDFLVPSYRGS 237
Query: 466 SFLDPKGRGASTGYDNAVALPAGGRGDEEELAKENNKSASSSKGKITLSVTQSKPETGEI 287
SFLDPKGRG STGYDNAVALPAGGRGDEEEL KENNK+ +SSKG ITLSVT SKPETGE+
Sbjct: 238 SFLDPKGRGGSTGYDNAVALPAGGRGDEEELQKENNKNVASSKGTITLSVTSSKPETGEV 297
Query: 286 IGVFESIQPSDTDLGAKAPKDVKIQGVWYAQLE 188
IGVF+S+QPSDTDLGAK PKDVKI+GVWYAQLE
Sbjct: 298 IGVFQSLQPSDTDLGAKVPKDVKIEGVWYAQLE 330
Database: nr
Posted date: Apr 1, 2003 2:05 AM
Number of letters in database: 448,689,247
Number of sequences in database: 1,393,205
Lambda K H
0.318 0.135 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 586,328,220
Number of Sequences: 1393205
Number of extensions: 13460455
Number of successful extensions: 43544
Number of sequences better than 10.0: 93
Number of HSP's better than 10.0 without gapping: 40641
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 43431
length of database: 448,689,247
effective HSP length: 118
effective length of database: 284,291,057
effective search space used: 27576232529
frameshift window, decay const: 50, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
